Browse Element(s) Details


Os.46454.1.S1_at

Description gb:AK100377.1
DB_XREF= gi:32985586
TID=Os.46454.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46454 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative membrane protein (OSJNBa0082M15.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023085B19, full insert sequence.
FL= gb:AK100377.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4014011/11vesicle-associated membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40080OsAffx.31578.2.S1_at11/1110+21132668..21133649hypothetical protein
LOC_Os10g40090Os.12697.1.S1_at11/1110+21135323..21137158Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40100Os.3287.1.S1_a_at10/1110+21137938..21143082U-box domain containing protein, expressed
LOC_Os10g40100Os.15454.1.S2_x_at1/1110+21137938..21143082U-box domain containing protein, expressed
LOC_Os10g40110Os.3284.1.S1_at11/1110+21143911..21147557chloroplast outer membrane protein, putative, expressed
LOC_Os10g40120OsAffx.30731.1.S1_at11/1110+21149739..21152329U-box domain containing protein, expressed
LOC_Os10g40130Os.3278.1.S1_at11/1110+21153054..21156614UDP-N-acetylmuramyl-tripeptide synthetases family protein, expressed
LOC_Os10g40140Os.46454.1.S1_at11/1110+21157154..21160052vesicle-associated membrane family protein, putative, expressed
LOC_Os10g40140Os.46502.2.S1_x_at5/1110+21157154..21160052vesicle-associated membrane family protein, putative, expressed
LOC_Os10g40150NANA10+21164197..21170307retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40160NANA10+21170623..21173548retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40170Os.46502.2.S1_x_at10/1110+21175673..21175963expressed protein
LOC_Os10g40170Os.46502.1.S1_at2/1110+21175673..21175963expressed protein
LOC_Os10g40180OsAffx.10596.1.S1_x_at1/1110+21177216..21183014retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40190NANA10+21184200..21187113retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0046907biological_processintracellular transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46454.1.S1_at--86--331Chr10:21158289..21158313 (25 bp)
AAAAGACGAACGAGACACCACCCTG
LOC_Os10g40140
Os.46454.1.S1_at--1109--10271Chr10:21157591..21157615 (25 bp)
TTTGCTGGGCTCATAGGTGTCCTGA
LOC_Os10g40140
Os.46454.1.S1_at--105--291Chr10:21157579..21157603 (25 bp)
ATAGGTGTCCTGATTGGGCTCTTGA
LOC_Os10g40140
Os.46454.1.S1_at--688--2431Chr10:21157515..21157539 (25 bp)
AAAATGCCAATTTCACAACCAAGTG
LOC_Os10g40140
Os.46454.1.S1_at--578--6471Chr10:21157491..21157515 (25 bp)
GATACATGTTCAGCTTAATGCCCAA
LOC_Os10g40140
Os.46454.1.S1_at--379--611Chr10:21157474..21157498 (25 bp)
ATGCCCAACAATGTGGCCATTATCG
LOC_Os10g40140
Os.46454.1.S1_at--877--9751Chr10:21157428..21157452 (25 bp)
TAATAATCGAGTCAGCTGCTCTGGG
LOC_Os10g40140
Os.46454.1.S1_at--716--611Chr10:21157335..21157359 (25 bp)
ATGCGTCACATCAGAAAAGGGTCAC
LOC_Os10g40140
Os.46454.1.S1_at--75--9711Chr10:21157314..21157338 (25 bp)
TCACAATGTTTCATCAACCCAACTC
LOC_Os10g40140
Os.46454.1.S1_at--290--1611Chr10:21157197..21157221 (25 bp)
AGCTGTATGCATTCACCGATTGGAT
LOC_Os10g40140
Os.46454.1.S1_at--786--351Chr10:21157172..21157196 (25 bp)
ATAAGGTCATGCTCAGTGAAGGACA
LOC_Os10g40140
Target Sequence 
AAAAGACGAACGAGACACCACCCTGCAGCAAAATCAGCAAATGCAACGTGAATTGGATGTGATCAGGAGGCGTAGAAGCC
GCAAAAGCGATGCGGGTTTCTCCTTAACGTTTGCTGCTTTTGCTGGGCTCATAGGTGTCCTGATTGGGCTCTTGATGAGC
CTCATCTTCCCTCGCCCACAGGCTGCTGCTTAATAAAATGCCAATTTCACAACCAAGTGATACATGTTCAGCTTAATGCC
CAACAATGTGGCCATTATCGATCAAACAATCATAGCTAGGTTAATAATCGAGTCAGCTGCTCTGGGGAGGAAAAATATAT
GGAAAATTCTACTTTAGTCTCAATTATTCTTTTGTTCTTTGCATTGTAGTTAATATGCGTCACATCAGAAAAGGGTCACA
ATGTTTCATCAACCCAACTCCCCCTTCCTTTTTTTATTAAAAAAATTGTATTTTCCCTTCTTATGTAATCTTTTTGTACA
ATTTAGTTTGACATAAACATATATCAGGGAGAAGCTGTATGCATTCACCGATTGGATATAAGGTCATGCTCAGTGAAGGA
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis