Browse Element(s) Details


OsAffx.4183.1.S1_at

Description tigr:9632.m05375
TID=OsAffx.4183.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5527010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55230Os.7692.1.S2_at11/114+32616110..32629411Ataxin-2 C-terminal region family protein, expressed
LOC_Os04g55230Os.7692.1.S1_at10/114+32616110..32629411Ataxin-2 C-terminal region family protein, expressed
LOC_Os04g55240Os.52439.1.S1_at11/114+32633073..32634031VQ motif family protein, expressed
LOC_Os04g55250Os.51420.1.S1_at11/114+32636588..32637580expressed protein
LOC_Os04g55260Os.20407.1.S1_at10/114+32637521..32641208expressed protein
LOC_Os04g55270OsAffx.4183.1.S1_at10/114+32644603..32645667hypothetical protein
LOC_Os04g55280NANA4+32645881..32648257hypothetical protein
LOC_Os04g55290Os.3537.1.S1_at11/114+32649048..32652552G10 protein homolog, putative, expressed
LOC_Os04g55290OsAffx.16132.1.S1_at1/114+32649048..32652552G10 protein homolog, putative, expressed
LOC_Os04g55300OsAffx.26611.2.S1_at9/114+32652874..32655325hypothetical protein
LOC_Os04g55300OsAffx.26611.1.S1_x_at8/114+32652874..32655325hypothetical protein
LOC_Os04g55300OsAffx.32209.1.A1_at5/114+32652874..32655325hypothetical protein
LOC_Os04g55300OsAffx.32283.1.S1_at1/114+32652874..32655325hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4183.1.S1_at--55--9111Chr04:32644775..32644799 (25 bp)
TGCTCGCACCGGTGCTGAGGCTGTC
LOC_Os04g55270
OsAffx.4183.1.S1_at--620--4771Chr04:32644831..32644855 (25 bp)
GCTGCTCTCCGGGTGGTGTCACTGC
LOC_Os04g55270
OsAffx.4183.1.S1_at--196--2911Chr04:32644879..32644903 (25 bp)
AAGGTTGCGCTGCTCCCTCCATGGG
LOC_Os04g55270
OsAffx.4183.1.S1_at--327--2871Chr04:32644925..32644948 (24 bp)
AAGTGGCTAGATGCAGTGCACTGGC
LOC_Os04g55270
OsAffx.4183.1.S1_at--963--3451NONE
CAGTGCACTGGCTAGCGGCTTGATG
NONE
OsAffx.4183.1.S1_at--799--8492Chr04:32645463..32645486 (24 bp)
TGGCTAGCGGCTTGATGCGATGCTT
LOC_Os04g55270
OsAffx.4183.1.S1_at--336--2171Chr04:32645518..32645542 (25 bp)
ACACCGGGTGACAGGTCCGCAGCGA
LOC_Os04g55270
OsAffx.4183.1.S1_at--872--9291Chr04:32645533..32645557 (25 bp)
TCCGCAGCGACCAGGAGCAATGACA
LOC_Os04g55270
OsAffx.4183.1.S1_at--97--6171Chr04:32645569..32645593 (25 bp)
GAGGATGCCGACACGGCCACCACAA
LOC_Os04g55270
OsAffx.4183.1.S1_at--587--2451Chr04:32645592..32645616 (25 bp)
AACACCGATGAAGGGTCGTTCTCCA
LOC_Os04g55270
OsAffx.4183.1.S1_at--84--8991Chr04:32645600..32645624 (25 bp)
TGAAGGGTCGTTCTCCAACGTCATC
LOC_Os04g55270
Target Sequence 
TGCTCGCACCGGTGCTGAGGCTGTCGCCTCTCCCGCTGCTCGACGAGGCTGAGGGCGCTGCTCTCCGGGTGGTGTCACTG
CCGCGGCTCGCAGGGGACGAGGCCAAGGTTGCGCTGCTCCCTCCATGGGCAGCTGCAAAAGGGGAAAAGGAAGTGGCTAG
ATGCAGTGCACTGGCTAGCGGCTTGATGCGATGCTTGGGCATGGAGGTGGCGGTGGGGTTGGCCGCGACACCGGGTGACA
GGTCCGCAGCGACCAGGAGCAATGACAAGGATGTCGCGGAGGATGCCGACACGGCCACCACAACACCGATGAAGGGTCGT
TCTCCAACGTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis