Browse Element(s) Details


OsAffx.11971.1.S1_at

Description tigr:9630.m00943
TID=OsAffx.11971.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1025011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10190Os.5227.1.S1_at11/112+5339189..5344517secreted protein, putative, expressed
LOC_Os02g10200Os.12188.1.S1_at11/112+5345611..5347486AN1-like Zinc finger family protein, expressed
LOC_Os02g10210OsAffx.18697.2.S1_at11/112+5348720..5350221expressed protein
LOC_Os02g10210Os.45990.2.S1_x_at8/112+5348720..5350221expressed protein
LOC_Os02g10220Os.6105.1.S1_at11/112+5351367..5355145Chaperone protein dnaJ 6, putative, expressed
LOC_Os02g10230Os.18721.1.S1_at11/112+5357310..5361629ZIP Zinc transporter family protein, expressed
LOC_Os02g10240Os.55753.1.S1_at11/112+5364450..5366226expressed protein
LOC_Os02g10240Os.55753.1.S1_x_at11/112+5364450..5366226expressed protein
LOC_Os02g10240OsAffx.29835.1.S1_x_at1/112+5364450..5366226expressed protein
LOC_Os02g10250OsAffx.11971.1.S1_at11/112+5369277..5369552hypothetical protein
LOC_Os02g10260Os.27720.1.S1_at10/112+5373128..5380134outer membrane protein, OMP85 family protein, expressed
LOC_Os02g10270OsAffx.32166.1218.S1_x_at6/112+5384499..5392658retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11971.1.S1_at--419--9231Chr02:5369325..5369349 (25 bp)
TCCATGATGGAGGTTGAAGCTTTCA
LOC_Os02g10250
OsAffx.11971.1.S1_at--673--8991Chr02:5369339..5369363 (25 bp)
TGAAGCTTTCATGGCCAAACAAGAA
LOC_Os02g10250
OsAffx.11971.1.S1_at--1083--1411Chr02:5369360..5369384 (25 bp)
AGAAAACCACAATCATCGCTTTGAG
LOC_Os02g10250
OsAffx.11971.1.S1_at--931--411Chr02:5369371..5369395 (25 bp)
ATCATCGCTTTGAGATCCACCACCA
LOC_Os02g10250
OsAffx.11971.1.S1_at--852--6351Chr02:5369384..5369408 (25 bp)
GATCCACCACCAAAGTCCACAGGGA
LOC_Os02g10250
OsAffx.11971.1.S1_at--736--2851Chr02:5369396..5369420 (25 bp)
AAGTCCACAGGGAAGAGCGCCAACC
LOC_Os02g10250
OsAffx.11971.1.S1_at--28--5371Chr02:5369407..5369431 (25 bp)
GAAGAGCGCCAACCCTTGCAGGTCT
LOC_Os02g10250
OsAffx.11971.1.S1_at--953--10711Chr02:5369422..5369446 (25 bp)
TTGCAGGTCTGCTCATTGGAAAATT
LOC_Os02g10250
OsAffx.11971.1.S1_at--641--5271Chr02:5369450..5369474 (25 bp)
GAATGGCCGGCGTAACCTTTTATTG
LOC_Os02g10250
OsAffx.11971.1.S1_at--1016--8351Chr02:5369458..5369482 (25 bp)
GGCGTAACCTTTTATTGCTTGTGGA
LOC_Os02g10250
OsAffx.11971.1.S1_at--272--10251Chr02:5369483..5369507 (25 bp)
TTTGAAGGACTACATGTTACAGATG
LOC_Os02g10250
Target Sequence 
TCCATGATGGAGGTTGAAGCTTTCATGGCCAAACAAGAAAACCACAATCATCGCTTTGAGATCCACCACCAAAGTCCACA
GGGAAGAGCGCCAACCCTTGCAGGTCTGCTCATTGGAAAATTGAAGAATGGCCGGCGTAACCTTTTATTGCTTGTGGATT
TGAAGGACTACATGTTACAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis