Browse Element(s) Details


OsAffx.24182.1.S1_at

Description tigr:9630.m00931
TID=OsAffx.24182.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to bZIP transcription factor-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1014011/11Transcription factor HBP-1b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10130Os.17046.1.S1_at11/112+5297665..5306435tubulin-specific chaperone C, putative, expressed
LOC_Os02g10140OsAffx.24182.1.S1_at11/112+5315119..5318064Transcription factor HBP-1b, putative, expressed
LOC_Os02g10150OsAffx.2562.1.S1_at11/112+5321781..5322421hypothetical protein
LOC_Os02g10160Os.25152.1.S1_at11/112+5324567..5328285expressed protein
LOC_Os02g10170OsAffx.11969.1.S1_at11/112+5329016..5330521expressed protein
LOC_Os02g10180Os.38811.1.S1_a_at11/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10180OsAffx.16132.1.S1_at1/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10180Os.25087.1.S1_at1/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10190Os.5227.1.S1_at11/112+5339189..5344517secreted protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24182.1.S1_at--665--3231Chr02:5316515..5316539 (25 bp)
CAAGACGCTGCGGAGGCTTGCACAG
LOC_Os02g10140
OsAffx.24182.1.S1_at--400--9691Chr02:5317019..5317043 (25 bp)
TCAAAATCTGGAGACAAGCAGGATC
LOC_Os02g10140
OsAffx.24182.1.S1_at--830--2711Chr02:5317034..5317058 (25 bp)
AAGCAGGATCAGACTGTCCCAGCTG
LOC_Os02g10140
OsAffx.24182.1.S1_at--276--5731Chr02:5317045..5317069 (25 bp)
GACTGTCCCAGCTGGAACAGGAGTT
LOC_Os02g10140
OsAffx.24182.1.S1_at--162--5491Chr02:5317059..5317083 (25 bp)
GAACAGGAGTTGGTGCAAAGATCAA
LOC_Os02g10140
OsAffx.24182.1.S1_at--696--6451Chr02:5317078..5317211 (25 bp)
GATCAAGAACTCAGGGTGCAATTTT
LOC_Os02g10140
OsAffx.24182.1.S1_at--1147--8991Chr02:5317203..5317227 (25 bp)
TGCAATTTTGGGTGGTGGAGCTTTT
LOC_Os02g10140
OsAffx.24182.1.S1_at--17--8531Chr02:5317218..5317242 (25 bp)
TGGAGCTTTTTCTGCCGGCATTGGA
LOC_Os02g10140
OsAffx.24182.1.S1_at--844--10571Chr02:5317227..5317251 (25 bp)
TTCTGCCGGCATTGGAGGACAAAGC
LOC_Os02g10140
OsAffx.24182.1.S1_at--478--2191Chr02:5317245..5317723 (25 bp)
ACAAAGCCCAGAGGCGGCGTGGTTC
LOC_Os02g10140
OsAffx.24182.1.S1_at--600--3331Chr02:5317754..5317778 (25 bp)
CACGAGAGGATGATGGCTCACATGC
LOC_Os02g10140
Target Sequence 
CAAGACGCTGCGGAGGCTTGCACAGAACAGGGAGGCAGCCAGGAAAAGCAGGCTAAGGAAGAAGGCTTACATTCAAAATC
TGGAGACAAGCAGGATCAGACTGTCCCAGCTGGAACAGGAGTTGGTGCAAAGATCAAGAACTCAGGGTGCAATTTTGGGT
GGTGGAGCTTTTTCTGCCGGCATTGGAGGACAAAGCCCAGAGGCGGCGTGGTTCGACGGCGAGTACGCGCGGTGGGTGGA
GAGCCACGAGAGGATGATGGCTCACATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis