Browse Element(s) Details


Os.10962.1.S1_at

Description gb:CB664686
DB_XREF= gi:29668411
DB_XREF=OSJNEd10I21.r
CLONE=OSJNEd10I21
TID=Os.10962.1
CNT=120
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.10962 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013072E12, full insert sequence
FL= gb:AK072838.1 gb:AK099686.1 gb:AK060817.1 gb:AK071429.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3805011/11PB1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38000Os.20341.2.S1_at1/112+22951916..22956828retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g38010NANA2+22957124..22960177Copper amine oxidase, N3 domain containing protein
LOC_Os02g38020Os.9506.1.S1_a_at11/112+22966020..22969422Phosphate transporter family protein, expressed
LOC_Os02g38040Os.52931.1.S1_at11/112+22972961..22975631Leucine Rich Repeat family protein, expressed
LOC_Os02g38050Os.10962.2.S1_x_at11/112+22975977..22981721PB1 domain containing protein, expressed
LOC_Os02g38050Os.10962.1.S1_at11/112+22975977..22981721PB1 domain containing protein, expressed
LOC_Os02g38060OsAffx.2904.1.S1_at11/112+22984837..22989130Cerebral protein 1, putative
LOC_Os02g38069NANA2+22990739..22991060NA
LOC_Os02g38080Os.18535.1.S1_at11/112+22994204..22999452Protein kinase domain containing protein, expressed
LOC_Os02g38080OsAffx.2562.1.S1_at1/112+22994204..22999452Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10962.1.S1_at--1080--10331Chr02:22977082..22977106 (25 bp)
TTTTGTCAGTAACAACAGGACTGCC
LOC_Os02g38050
Os.10962.1.S1_at--651--7091Chr02:22977078..22977102 (25 bp)
GTCAGTAACAACAGGACTGCCGCTA
LOC_Os02g38050
Os.10962.1.S1_at--260--1171Chr02:22977075..22977099 (25 bp)
AGTAACAACAGGACTGCCGCTATAA
LOC_Os02g38050
Os.10962.1.S1_at--333--7051Chr02:22977074..22977098 (25 bp)
GTAACAACAGGACTGCCGCTATAAA
LOC_Os02g38050
Os.10962.1.S1_at--365--2471Chr02:22977072..22977096 (25 bp)
AACAACAGGACTGCCGCTATAAACT
LOC_Os02g38050
Os.10962.1.S1_at--218--2131Chr02:22977068..22977092 (25 bp)
ACAGGACTGCCGCTATAAACTTGAA
LOC_Os02g38050
Os.10962.1.S1_at--1135--3471Chr02:22977067..22977091 (25 bp)
CAGGACTGCCGCTATAAACTTGAAT
LOC_Os02g38050
Os.10962.1.S1_at--576--951Chr02:22977066..22977090 (25 bp)
AGGACTGCCGCTATAAACTTGAATT
LOC_Os02g38050
Os.10962.1.S1_at--489--9831Chr02:22977053..22977077 (25 bp)
TAAACTTGAATTTGCCCCCAGAAAG
LOC_Os02g38050
Os.10962.1.S1_at--1077--8991Chr02:22977047..22977071 (25 bp)
TGAATTTGCCCCCAGAAAGCAATAT
LOC_Os02g38050
Os.10962.1.S1_at--721--5551Chr02:22977033..22977057 (25 bp)
GAAAGCAATATCACAAACACAAGTA
LOC_Os02g38050
Target Sequence 
TTTTGTCAGTAACAACAGGACTGCCGCTATAAACTTGAATTTGCCCCCAGAAAGCAATATCACAAACACAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis