Browse Element(s) Details


Os.17598.1.S1_at

Description gb:AK060490.1
DB_XREF= gi:32970508
TID=Os.17598.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17598 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-015-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-H10, full insert sequence.
FL= gb:AK060490.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g381409/11beta 1,4 N-acetylglucosaminyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38120OsAffx.24626.1.S1_at11/112+23038727..23041525NPH3 family protein, expressed
LOC_Os02g38120OsAffx.24626.1.S1_x_at11/112+23038727..23041525NPH3 family protein, expressed
LOC_Os02g38120Os.57345.1.S1_at10/112+23038727..23041525NPH3 family protein, expressed
LOC_Os02g38130Os.50585.1.S1_at11/112+23056986..23060677No apical meristem protein, expressed
LOC_Os02g38140Os.17598.1.S1_at9/112+23063869..23066657beta 1,4 N-acetylglucosaminyltransferase, putative, expressed
LOC_Os02g38150OsAffx.5106.1.S1_at2/112+23067758..23068544hypothetical protein
LOC_Os02g38160Os.9993.1.S1_at11/112+23077237..23080571glycosyl transferase family 17 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008375molecular_functionacetylglucosaminyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17598.1.S1_at--604--3191Chr02:23064327..23064351 (25 bp)
CAATCCCTAGCACATTTTCAGCTGT
LOC_Os02g38140
Os.17598.1.S1_at--1154--1731Chr02:23064300..23064324 (25 bp)
ACCTTCCTGCTTATCTGTTGGAGAA
LOC_Os02g38140
Os.17598.1.S1_at--1008--9571Chr02:23064254..23064278 (25 bp)
TCTTCCGGGCAACTGCATGCGAGAA
LOC_Os02g38140
Os.17598.1.S1_at--1088--711Chr02:23064203..23064227 (25 bp)
ATGATCTGATGCACAATGCCCCTTT
LOC_Os02g38140
Os.17598.1.S1_at--230--10251Chr02:23064181..23064205 (25 bp)
TTTGGAGGAACATCGCGCCACAGCG
LOC_Os02g38140
Os.17598.1.S1_at--1088--5691Chr02:23064140..23064164 (25 bp)
GACTAGCTTAGTTGAGCGACCAATT
LOC_Os02g38140
Os.17598.1.S1_at--1110--8251Chr02:23064014..23064038 (25 bp)
GGCAGAGTGTGCTTATACCACCCGA
LOC_Os02g38140
Os.17598.1.S1_at--515--311Chr02:23064000..23064024 (25 bp)
ATACCACCCGAGTTTATTCATTGCT
LOC_Os02g38140
Os.17598.1.S1_at--1082--7351Chr02:23063927..23063951 (25 bp)
GTGACACTCTAGATCTGGTCCAACT
LOC_Os02g38140
Os.17598.1.S1_at--199--8591NONE
TGGTCCAACTCCATGGTGTACATTG
NONE
Os.17598.1.S1_at--161--6472Chr07:26732559..26732578 (20 bp)
GATACTAGTACCATTTTTCTCTTCT
NONE
Target Sequence 
CAATCCCTAGCACATTTTCAGCTGTTCACCTTCCTGCTTATCTGTTGGAGAAAATGGACCAGTACCGCTATCTTCTTCCG
GGCAACTGCATGCGAGAAAGTGGCTAGGGATGATGATTTGCATTATGATCTGATGCACAATGCCCCTTTGGAGGAACATC
GCGCCACAGCGTGTAGCTGATACGATTGACTAGCTTAGTTGAGCGACCAATTGGTGGTTGGTTTGAGTTCATGATTTTGT
ACTGTGTAGTTGGAAGGCCTAACAGCATAGCGCATGCTTGGGCGTGCTGCGTGCTTGTTTTGCAGAGGAGCTCGGCAGAG
TGTGCTTATACCACCCGAGTTTATTCATTGCTCCCATGATTGATATATGAACTCAAAACTATTTGTAAATTGTGAACTGA
GTGACACTCTAGATCTGGTCCAACTCCATGGTGTACATTGTCATTTACTTACANGATGAGATACTAGTACCATTTTTCTC
TTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis