Browse Element(s) Details


Os.9993.1.S1_at

Description gb:AK065136.1
DB_XREF= gi:32975154
TID=Os.9993.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023058I02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002A04, full insert sequence.
FL= gb:AK065136.1 gb:AK070690.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3816011/11glycosyl transferase family 17 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38130Os.50585.1.S1_at11/112+23056986..23060677No apical meristem protein, expressed
LOC_Os02g38140Os.17598.1.S1_at9/112+23063869..23066657beta 1,4 N-acetylglucosaminyltransferase, putative, expressed
LOC_Os02g38150OsAffx.5106.1.S1_at2/112+23067758..23068544hypothetical protein
LOC_Os02g38160Os.9993.1.S1_at11/112+23077237..23080571glycosyl transferase family 17 protein, putative, expressed
LOC_Os02g38170OsAffx.12393.1.S1_x_at11/112+23092177..23092802expressed protein
LOC_Os02g38180OsAffx.24627.1.S1_at10/112+23092959..23096875expressed protein
LOC_Os02g38190Os.9024.1.S1_at11/112+23099821..23100668expressed protein
LOC_Os02g38200Os.22514.1.S1_at11/112+23101138..23104476Isocitrate dehydrogenase subunit 1, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008375molecular_functionacetylglucosaminyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9993.1.S1_at--671--1171Chr02:23077800..23077824 (25 bp)
AGTACAGTTATCTTCTTCCAGGGCG
LOC_Os02g38160
Os.9993.1.S1_at--787--1091Chr02:23077762..23077786 (25 bp)
AGTGGCTAGGCACTTGCAGCTTGCA
LOC_Os02g38160
Os.9993.1.S1_at--219--5071Chr02:23077747..23077771 (25 bp)
GCAGCTTGCATAACCTGATGCGCAT
LOC_Os02g38160
Os.9993.1.S1_at--733--7991Chr02:23077713..23077737 (25 bp)
GGATGATGCCCCTTTGGAGAACAAC
LOC_Os02g38160
Os.9993.1.S1_at--836--8331Chr02:23077656..23077680 (25 bp)
GGCTGACTTAGTTGAGCGATCGCTT
LOC_Os02g38160
Os.9993.1.S1_at--67--9351Chr02:23077637..23077661 (25 bp)
TCGCTTGGCGATTTGGGTGAGTTCA
LOC_Os02g38160
Os.9993.1.S1_at--1016--1091Chr02:23077517..23077541 (25 bp)
AGTGTGTGTGCTTTTACCTCCTGAG
LOC_Os02g38160
Os.9993.1.S1_at--95--3551Chr02:23077497..23077521 (25 bp)
CTGAGTTTTACCCATTACTTCCATG
LOC_Os02g38160
Os.9993.1.S1_at--1120--6051Chr02:23077373..23077397 (25 bp)
GAGTTACCCTGCATTGATTCTCCGG
LOC_Os02g38160
Os.9993.1.S1_at--440--651Chr02:23077287..23077311 (25 bp)
ATGCAGTTGGTGTTTGGTCTCAGCT
LOC_Os02g38160
Os.9993.1.S1_at--780--7811Chr02:23077272..23077296 (25 bp)
GGTCTCAGCTAACTGTTTGCAAACA
LOC_Os02g38160
Target Sequence 
AGTACAGTTATCTTCTTCCAGGGCGATGCATGAGAGAGAGTGGCTAGGCACTTGCAGCTTGCATAACCTGATGCGCATGG
GGATCGTGGATGATGCCCCTTTGGAGAACAACATGCGAGATATTGGTTGTACCTGATACAATTTGGCTGACTTAGTTGAG
CGATCGCTTGGCGATTTGGGTGAGTTCATGATTTTGTACTGGTGTAGCCAAACATTGGAAGAAGGCCTGACAGCATAGCG
CATGCTTGGGCGCTGCGTTCTTGTTTTTTTTAGAGGAGCTCAGCAGTGTGTGTGCTTTTACCTCCTGAGTTTTACCCATT
ACTTCCATGGTTGATATATGAACTCAGAAACTCTTGTAGATTGTGAACTGGATGACATCCAGAATTTTTTTTTATCTTGT
TCTGTACAGTATCATTTACTTACCAGANGAGTTACCCTGCATTGATTCTCCGGGCAATAANNANNNNNNNNNNANTNNAN
ANANNTGCTGTACACTACAGAAAGCACATGTATAATGCAGTTGGTGTTTGGTCTCAGCTAACTGTTTGCAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis