Browse Element(s) Details


Os.9024.1.S1_at

Description gb:AK069935.1
DB_XREF= gi:32979959
TID=Os.9024.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9024 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039O17, full insert sequence.
FL= gb:AK069935.1 gb:AK099175.1 gb:AK103993.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3819011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38160Os.9993.1.S1_at11/112+23077237..23080571glycosyl transferase family 17 protein, putative, expressed
LOC_Os02g38170OsAffx.12393.1.S1_x_at11/112+23092177..23092802expressed protein
LOC_Os02g38180OsAffx.24627.1.S1_at10/112+23092959..23096875expressed protein
LOC_Os02g38190Os.9024.1.S1_at11/112+23099821..23100668expressed protein
LOC_Os02g38200Os.22514.1.S1_at11/112+23101138..23104476Isocitrate dehydrogenase subunit 1, mitochondrial precursor, putative, expressed
LOC_Os02g38210Os.4831.1.S1_a_at11/112+23106068..23108027Elongation factor Tu, chloroplast precursor, putative, expressed
LOC_Os02g38220OsAffx.24628.1.S1_at11/112+23110383..23114600eukaryotic translation initiation factor 4B, putative, expressed
LOC_Os02g38230OsAffx.24629.1.S1_at11/112+23115502..23117230NAR2.2, putative, expressed
LOC_Os02g38240Os.19872.1.S1_at10/112+23121042..23124033rhodanese family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9024.1.S1_at--215--4591Chr02:23100263..23100287 (25 bp)
GCGACAAGTCCCTGAAGCGCGCGTA
LOC_Os02g38190
Os.9024.1.S1_at--1102--2731Chr02:23100153..23100177 (25 bp)
AAGAAGGAGAACGTGCTCCGCTCGG
LOC_Os02g38190
Os.9024.1.S1_at--947--5071Chr02:23100128..23100152 (25 bp)
GCACCAAGCTGCAGCGGGTCACCAA
LOC_Os02g38190
Os.9024.1.S1_at--529--2771Chr02:23100099..23100123 (25 bp)
AAGACCATCCAGAAGATCGCCAAGT
LOC_Os02g38190
Os.9024.1.S1_at--258--1631Chr02:23100068..23100092 (25 bp)
AGCGGAAGCAGCTCAAGGTCGTCCC
LOC_Os02g38190
Os.9024.1.S1_at--613--7271Chr02:23099994..23100018 (25 bp)
GTGCCCGGCCTAGACAACTGAAGAT
LOC_Os02g38190
Os.9024.1.S1_at--886--6211Chr02:23099972..23099996 (25 bp)
GATCGCCTTACCAAACAAATCCTTT
LOC_Os02g38190
Os.9024.1.S1_at--1060--2271Chr02:23099956..23099980 (25 bp)
AAATCCTTTTGTTATCTGTGATACC
LOC_Os02g38190
Os.9024.1.S1_at--384--6491Chr02:23099937..23099961 (25 bp)
GATACCCATGTTACAGTGCAGCTTA
LOC_Os02g38190
Os.9024.1.S1_at--749--4891Chr02:23099917..23099941 (25 bp)
GCTTACTAGTTTTTACATTGCGCAA
LOC_Os02g38190
Os.9024.1.S1_at--885--10091Chr02:23099854..23099878 (25 bp)
TATGGTCAATCCAGCAATTATGTTG
LOC_Os02g38190
Target Sequence 
GCGACAAGTCCCTGAAGCGCGCGTACCAGGCCCGCGTGGCGGAGCTCAAGGAGGAGATCCGGCAGAGCAAGGCGGCGAAG
CGGAAGCAGCGGGAGGAGCGGGAGAAGCGCAAGAAGGAGAACGTGCTCCGCTCGGGCACCAAGCTGCAGCGGGTCACCAA
CCCCAAGACCATCCAGAAGATCGCCAAGTCCAAGAAGCGGAAGCAGCTCAAGGTCGTCCCCGACGAGTTCCTCGGCGGCA
AGAAGTCGGACGCCAACCGCCGCATGCAGGTGCCCGGCCTAGACAACTGAAGATCGCCTTACCAAACAAATCCTTTTGTT
ATCTGTGATACCCATGTTACAGTGCAGCTTACTAGTTTTTACATTGCGCAACGAGATTTTGTACTAATGCTTTAGCATGA
GATTTTAAGTATGGTCAATCCAGCAATTATGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis