Browse Element(s) Details


OsAffx.24629.1.S1_at

Description tigr:9630.m03670
TID=OsAffx.24629.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3823011/11NAR2.2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38170OsAffx.12393.1.S1_x_at11/112+23092177..23092802expressed protein
LOC_Os02g38180OsAffx.24627.1.S1_at10/112+23092959..23096875expressed protein
LOC_Os02g38190Os.9024.1.S1_at11/112+23099821..23100668expressed protein
LOC_Os02g38200Os.22514.1.S1_at11/112+23101138..23104476Isocitrate dehydrogenase subunit 1, mitochondrial precursor, putative, expressed
LOC_Os02g38210Os.4831.1.S1_a_at11/112+23106068..23108027Elongation factor Tu, chloroplast precursor, putative, expressed
LOC_Os02g38220OsAffx.24628.1.S1_at11/112+23110383..23114600eukaryotic translation initiation factor 4B, putative, expressed
LOC_Os02g38230OsAffx.24629.1.S1_at11/112+23115502..23117230NAR2.2, putative, expressed
LOC_Os02g38240Os.19872.1.S1_at10/112+23121042..23124033rhodanese family protein, putative, expressed
LOC_Os02g38250Os.6276.1.S1_at11/112+23126195..23134470expressed protein
LOC_Os02g38260Os.29747.1.S1_at8/112+23136310..23138156Cellulase containing protein, expressed
LOC_Os02g38260Os.29747.2.S1_at3/112+23136310..23138156Cellulase containing protein, expressed
LOC_Os02g38270NANA2+23139767..23141128retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38280OsAffx.21897.5.S1_x_at4/112+23141444..23144385retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24629.1.S1_at--220--9111Chr02:23117141..23117165 (25 bp)
TGCTGCTCTCTCGTTGGTGCTCGTC
LOC_Os02g38230
OsAffx.24629.1.S1_at--640--9391Chr02:23117131..23117155 (25 bp)
TCGTTGGTGCTCGTCTTGCTCGGCG
LOC_Os02g38230
OsAffx.24629.1.S1_at--929--7151Chr02:23117026..23117047 (22 bp)
GTCTCGCCCAAGCACGGTGAAGTCG
LOC_Os02g38230
OsAffx.24629.1.S1_at--1091--1911Chr02:23115947..23115971 (23 bp)
ACGGTGAAGTCGTGCACGCCGGCGA
LOC_Os02g38230
OsAffx.24629.1.S1_at--1006--8931Chr02:23115914..23115938 (25 bp)
TGACGGTGACGTGGTCGCTGAACAC
LOC_Os02g38230
OsAffx.24629.1.S1_at--565--1911Chr02:23115906..23115930 (25 bp)
ACGTGGTCGCTGAACACGTCGGAGC
LOC_Os02g38230
OsAffx.24629.1.S1_at--467--2931Chr02:23115771..23115795 (25 bp)
AAGGCGTGCCAGTTCAAGGTCACCG
LOC_Os02g38230
OsAffx.24629.1.S1_at--1--1231Chr02:23115761..23115785 (25 bp)
AGTTCAAGGTCACCGTGCAGCCGTA
LOC_Os02g38230
OsAffx.24629.1.S1_at--87--2911Chr02:23115756..23115780 (25 bp)
AAGGTCACCGTGCAGCCGTACGCCG
LOC_Os02g38230
OsAffx.24629.1.S1_at--36--8271Chr02:23115723..23115747 (25 bp)
GGCAGGTTCGACTACGTGGTGGCGC
LOC_Os02g38230
OsAffx.24629.1.S1_at--327--1931Chr02:23115642..23115666 (25 bp)
ACGGAGGTGGCCTACGGGCAGAGCT
LOC_Os02g38230
Target Sequence 
TGCTGCTCTCTCGTTGGTGCTCGTCTTGCTCGGCGCCGGCGTGCCCCGGCCGGCGGCCGCCGCCGCGGCGAAGACGCAGG
TGTTCCTCTCCAAGCTGCCCAAAGCGCTCGTCGTCGGCGTCTCGCCCAAGCACGGTGAAGTCGTGCACGCCGGCGAGAAC
ACGGTGACGGTGACGTGGTCGCTGAACACGTCGGAGCCGGCGGGCGCCGACGCGGCGTTCAAGAGCGTGAAGGTGAAGCT
GTGCTACGCGCCGGCGAGCCGGACGGACCGCGGGTGGCGCAAGGCCTCCGACGACCTGCACAAGGACAAGGCGTGCCAGT
TCAAGGTCACCGTGCAGCCGTACGCCGCCGGCGCCGGCAGGTTCGACTACGTGGTGGCGCGCGACATCCCGACGGCGTCC
TACTTCGTGCGCGCCTACGCGGTGGACGCGTCCGGCACGGAGGTGGCCTACGGGCAGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis