Browse Element(s) Details


Os.19872.1.S1_at

Description gb:AK072766.1
DB_XREF= gi:32982789
TID=Os.19872.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023139H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139H13, full insert sequence.
FL= gb:AK062238.1 gb:AK072766.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3824010/11rhodanese family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38180OsAffx.24627.1.S1_at10/112+23092959..23096875expressed protein
LOC_Os02g38190Os.9024.1.S1_at11/112+23099821..23100668expressed protein
LOC_Os02g38200Os.22514.1.S1_at11/112+23101138..23104476Isocitrate dehydrogenase subunit 1, mitochondrial precursor, putative, expressed
LOC_Os02g38210Os.4831.1.S1_a_at11/112+23106068..23108027Elongation factor Tu, chloroplast precursor, putative, expressed
LOC_Os02g38220OsAffx.24628.1.S1_at11/112+23110383..23114600eukaryotic translation initiation factor 4B, putative, expressed
LOC_Os02g38230OsAffx.24629.1.S1_at11/112+23115502..23117230NAR2.2, putative, expressed
LOC_Os02g38240Os.19872.1.S1_at10/112+23121042..23124033rhodanese family protein, putative, expressed
LOC_Os02g38250Os.6276.1.S1_at11/112+23126195..23134470expressed protein
LOC_Os02g38260Os.29747.1.S1_at8/112+23136310..23138156Cellulase containing protein, expressed
LOC_Os02g38260Os.29747.2.S1_at3/112+23136310..23138156Cellulase containing protein, expressed
LOC_Os02g38270NANA2+23139767..23141128retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38280OsAffx.21897.5.S1_x_at4/112+23141444..23144385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38290Os.49646.1.S1_at11/112+23147015..23149010Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19872.1.S1_at--55--5331Chr02:23121538..23121562 (25 bp)
GAAGGGCTGGGCTACCGTCTGATCT
LOC_Os02g38240
Os.19872.1.S1_at--169--2111NONE
ACAGGCCGTTTGGTTGGAGCACTCG
NONE
Os.19872.1.S1_at--587--1491Chr02:23121410..23121434 (25 bp)
AGCACTCGTGCTTGTCGACGCATTA
LOC_Os02g38240
Os.19872.1.S1_at--813--5791Chr02:23121394..23121418 (25 bp)
GACGCATTATTTCTTGGCGCTCAAA
LOC_Os02g38240
Os.19872.1.S1_at--804--2311Chr02:23121372..23121396 (25 bp)
AAAGGATTGGCCCTCTGCTTCAAGA
LOC_Os02g38240
Os.19872.1.S1_at--575--2751Chr02:23121351..23121375 (25 bp)
AAGAACTGCAATCTCGCTAACGAAT
LOC_Os02g38240
Os.19872.1.S1_at--402--5951Chr02:23121316..23121340 (25 bp)
GAGCAAACTGCTCTTGTGACGTCCA
LOC_Os02g38240
Os.19872.1.S1_at--930--8651Chr02:23121302..23121326 (25 bp)
TGTGACGTCCAAGCTTTTCGAGCAC
LOC_Os02g38240
Os.19872.1.S1_at--212--6051Chr02:23121267..23121291 (25 bp)
GAGTTGTTGCGGCTCCGTAATGTAA
LOC_Os02g38240
Os.19872.1.S1_at--266--8211Chr02:23121133..23121157 (25 bp)
GGAATCTCTTTCTTTCGTATACAAT
LOC_Os02g38240
Os.19872.1.S1_at--626--10231Chr02:23121097..23121121 (25 bp)
TATTGTTCCCAAACAGGCCTGGATC
LOC_Os02g38240
Target Sequence 
GAAGGGCTGGGCTACCGTCTGATCTTCACAGGCCGTTTGGTTGGAGCACTCGTGCTTGTCGACGCATTATTTCTTGGCGC
TCAAAGGATTGGCCCTCTGCTTCAAGAACTGCAATCTCGCTAACGAATATCGGTCTATGAGCAAACTGCTCTTGTGACGT
CCAAGCTTTTCGAGCACCTCCGGCTGTGAGTTGTTGCGGCTCCGTAATGTAAGCCCATTGTACATGTATGGGGGAAAAAT
CAAGCTTTCCATGTTTTGAATTTATGGCTGTAGCCTGTAGGTTACTAGGTTTCATCTCGTTTGGGAGGTAGAATTTCCGT
AGGAATCTCTTTCTTTCGTATACAATTTGGTCAAATTTATTGTTCCCAAACAGGCCTGGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis