Browse Element(s) Details


OsAffx.24628.1.S1_at

Description tigr:9630.m03669
TID=OsAffx.24628.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to eukaryotic initiation factor 4B
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3822011/11eukaryotic translation initiation factor 4B, putative, expressed
LOC_Os04g404002/11eukaryotic translation initiation factor 4B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38170OsAffx.12393.1.S1_x_at11/112+23092177..23092802expressed protein
LOC_Os02g38180OsAffx.24627.1.S1_at10/112+23092959..23096875expressed protein
LOC_Os02g38190Os.9024.1.S1_at11/112+23099821..23100668expressed protein
LOC_Os02g38200Os.22514.1.S1_at11/112+23101138..23104476Isocitrate dehydrogenase subunit 1, mitochondrial precursor, putative, expressed
LOC_Os02g38210Os.4831.1.S1_a_at11/112+23106068..23108027Elongation factor Tu, chloroplast precursor, putative, expressed
LOC_Os02g38220OsAffx.24628.1.S1_at11/112+23110383..23114600eukaryotic translation initiation factor 4B, putative, expressed
LOC_Os02g38230OsAffx.24629.1.S1_at11/112+23115502..23117230NAR2.2, putative, expressed
LOC_Os02g38240Os.19872.1.S1_at10/112+23121042..23124033rhodanese family protein, putative, expressed
LOC_Os02g38250Os.6276.1.S1_at11/112+23126195..23134470expressed protein
LOC_Os02g38260Os.29747.1.S1_at8/112+23136310..23138156Cellulase containing protein, expressed
LOC_Os02g38260Os.29747.2.S1_at3/112+23136310..23138156Cellulase containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24628.1.S1_at--484--10091Chr02:23111429..23111453 (25 bp)
TAGGCCAGGAAGTGCGCATTCGTCT
LOC_Os02g38220
OsAffx.24628.1.S1_at--442--9272Chr04:23795079..23795099 (21 bp)
TCCTGGGAGCCCTGGATCACAGACA
LOC_Os04g40400
OsAffx.24628.1.S1_at--559--6131Chr02:23111507..23111531 (25 bp)
GAGGGCTCGGCCGAAGGTTAATCCT
LOC_Os02g38220
OsAffx.24628.1.S1_at--721--271Chr02:23111596..23111620 (25 bp)
ATCTTGAGTTGGAGCATCGTCGAAT
LOC_Os02g38220
OsAffx.24628.1.S1_at--986--2171Chr02:23113726..23113750 (25 bp)
AACAGATTAACCTGCTTAGGGTGGA
LOC_Os02g38220
OsAffx.24628.1.S1_at--148--5891Chr02:23113833..23113857 (25 bp)
GAGCGTCTTACAGTTGAGTTGGACA
LOC_Os02g38220
OsAffx.24628.1.S1_at--201--8152Chr04:23796303..23796322 (20 bp)
GGACAACAAGGTTCGATTTGGGCAA
LOC_Os04g40400
OsAffx.24628.1.S1_at--240--8631Chr02:23113871..23113895 (25 bp)
TGGGCAAAGACCTGGTTCTGGATCT
LOC_Os02g38220
OsAffx.24628.1.S1_at--427--7971Chr02:23113890..23113914 (25 bp)
GGATCTGGCAAGGTTACTGCACATT
LOC_Os02g38220
OsAffx.24628.1.S1_at--203--2651Chr02:23113960..23113984 (25 bp)
AACCACGTTCCCGTAGCAGCATAGA
LOC_Os02g38220
OsAffx.24628.1.S1_at--599--8131Chr02:23114033..23114057 (25 bp)
GGACAGAGGCTCATTTGGTGGTAAC
LOC_Os02g38220
Target Sequence 
TAGGCCAGGAAGTGCGCATTCGTCTCTTCCTGGGAGCCCTGGATCACAGACATCAGCTGTGGGTAGTGAAGGTGTGCCGA
GGGCTCGGCCGAAGGTTAATCCTTTTGGGGATGCGAAGCCAAGAGAGGTAGTTCTTCAGGAGAAAGGCAAGGATTGGAGA
AAGATTGATCTTGAGTTGGAGCATCGTCGAATTGATAGACCGGAGACAAACGAAGAGAAGGATTTGAAAGAACAGATTAA
CCTGCTTAGGGTGGATTTGAAAGAAACTGAAGCAAACATAAGTGACGAGGATAAAAAAGGTTTATCAGAAAAGTTATCCC
AGATGGAAAGGGAACTGGAGCGTCTTACAGTTGAGTTGGACAACAAGGTTCGATTTGGGCAAAGACCTGGTTCTGGATCT
GGCAAGGTTACTGCACATTTAAGTAATTCACCAGACGAATCACAGATTACAGAGTCAATGGAACAACCACGTTCCCGTAG
CAGCATAGACCAAAATCCTAAACCAGCAGAAGAAAGGTGGGGGTTTCAGGGCAACAGGGACAGAGGCTCATTTGGTGGTA
AC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24628.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis