Browse Element(s) Details


OsAffx.15312.1.S1_at

Description tigr:9634.m00795
TID=OsAffx.15312.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0854011/11formin homology 2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08510OsAffx.4769.1.S1_s_at11/116+4199932..4201852expressed protein
LOC_Os06g08510OsAffx.4769.1.S1_at11/116+4199932..4201852expressed protein
LOC_Os06g08510Os.37590.1.S1_at10/116+4199932..4201852expressed protein
LOC_Os06g08520NANA6+4204533..4205996transposon protein, putative, unclassified
LOC_Os06g08530Os.11350.1.S1_x_at11/116+4212191..4217589Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os06g08540OsAffx.15312.1.S1_at11/116+4223415..4226743formin homology 2 domain-containing protein, putative, expressed
LOC_Os06g08550OsAffx.29297.1.S1_at3/116+4228248..4232158transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g08550OsAffx.24626.1.S1_x_at1/116+4228248..4232158transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g08560OsAffx.15313.1.S1_s_at11/116+4248414..4263340ABC transporter family protein, putative, expressed
LOC_Os06g08560Os.30059.2.S1_x_at2/116+4248414..4263340ABC transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15312.1.S1_at--788--10531Chr06:4226177..4226201 (25 bp)
TTCAGTCATCTGGATTGGTCAACCA
LOC_Os06g08540
OsAffx.15312.1.S1_at--1082--851Chr06:4226259..4226283 (25 bp)
ATGGCTTTGATGCAGTATCTCTTCA
LOC_Os06g08540
OsAffx.15312.1.S1_at--839--10011Chr06:4226317..4226341 (25 bp)
TAGCTTGCTAGGAACCAGATCTGTC
LOC_Os06g08540
OsAffx.15312.1.S1_at--638--5491Chr06:4226363..4226387 (25 bp)
GAACATAACCATTCTTCTGCGCCAA
LOC_Os06g08540
OsAffx.15312.1.S1_at--1053--3811Chr06:4226379..4226403 (25 bp)
CTGCGCCAACGTTCGACATTGTCAA
LOC_Os06g08540
OsAffx.15312.1.S1_at--1153--3591Chr06:4226395..4226419 (25 bp)
CATTGTCAAAGATCCGGTTGCTGAT
LOC_Os06g08540
OsAffx.15312.1.S1_at--487--7911Chr06:4226410..4226434 (25 bp)
GGTTGCTGATACACATTCCTTGCCA
LOC_Os06g08540
OsAffx.15312.1.S1_at--818--4211Chr06:4226432..4226456 (25 bp)
CCAGAAACTTACTCACTTGCACTAG
LOC_Os06g08540
OsAffx.15312.1.S1_at--310--4451Chr06:4226545..4226569 (25 bp)
GCCTTCGGCGAATTCACGAGACTCA
LOC_Os06g08540
OsAffx.15312.1.S1_at--773--8591Chr06:4226600..4226624 (25 bp)
TGGTCAGACACCAACACGGACACGT
LOC_Os06g08540
OsAffx.15312.1.S1_at--393--10671Chr06:4226624..4226648 (25 bp)
TTCCTGTCAGATACACCTTCAAGCA
LOC_Os06g08540
Target Sequence 
TTCAGTCATCTGGATTGGTCAACCAAAAGCGATGACGTGACAACTAATGCAACAGAACAGAATGGGTCTAACAATGAGCA
TGATGGCTTTGATGCAGTATCTCTTCAGGAAACAGAAAACAGCAATTCCACATCTGAACATAGCTTGCTAGGAACCAGAT
CTGTCCAGGTTATTCAGATGGAAACAGAACATAACCATTCTTCTGCGCCAACGTTCGACATTGTCAAAGATCCGGTTGCT
GATACACATTCCTTGCCAGAAACTTACTCACTTGCACTAGAATCTCAAGAGCACAAACTCTTTGAAGATTCATCTCCAAG
GGAGCTACCAAAATTGGATACCACCAAGAACAACCCCAACTCCGACCTGCCTTCGGCGAATTCACGAGACTCAGAAGCTG
CTGGTGATGCTGCTGTTGCTGAATGGTCAGACACCAACACGGACACGTTCCTGTCAGATACACCTTCAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis