Browse Element(s) Details


OsAffx.4769.1.S1_s_at

Description tigr:9634.m00792
TID=OsAffx.4769.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0851011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08480Os.10925.1.S1_at11/116+4166231..4182563Type III restriction enzyme, res subunit family protein, expressed
LOC_Os06g08490Os.6257.1.S1_at11/116+4188087..4189564expressed protein
LOC_Os06g08500OsAffx.27510.2.S1_at11/116+4191208..4193417Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g08500OsAffx.27510.2.S1_x_at11/116+4191208..4193417Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g08510OsAffx.4769.1.S1_s_at11/116+4199932..4201852expressed protein
LOC_Os06g08510OsAffx.4769.1.S1_at11/116+4199932..4201852expressed protein
LOC_Os06g08510Os.37590.1.S1_at10/116+4199932..4201852expressed protein
LOC_Os06g08520NANA6+4204533..4205996transposon protein, putative, unclassified
LOC_Os06g08530Os.11350.1.S1_x_at11/116+4212191..4217589Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os06g08540OsAffx.15312.1.S1_at11/116+4223415..4226743formin homology 2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4769.1.S1_s_at--474--2491Chr06:4200590..4200614 (25 bp)
AACAGTTGGTGGTGGTTCAGTGACT
LOC_Os06g08510
OsAffx.4769.1.S1_s_at--704--7731Chr06:4200580..4200604 (25 bp)
GGTGGTTCAGTGACTACTGACCCAA
LOC_Os06g08510
OsAffx.4769.1.S1_s_at--550--1971Chr06:4200565..4200589 (25 bp)
ACTGACCCAAGCCAACCAGTTGTTA
LOC_Os06g08510
OsAffx.4769.1.S1_s_at--264--4392Chr01:8654325..8654349 (25 bp)
GCCAACCAGTTGTTAAAAAGCGTCT
NONE
OsAffx.4769.1.S1_s_at--493--1631Chr06:4200537..4200561 (25 bp)
AGCGTCTCCCAAAGAAAATTAGACA
LOC_Os06g08510
OsAffx.4769.1.S1_s_at--264--2832Chr01:8654367..8654391 (25 bp)
AAGTTCCTGAATGCTATTTTCTGCC
NONE
OsAffx.4769.1.S1_s_at--330--9012Chr01:8654374..8654398 (25 bp)
TGAATGCTATTTTCTGCCTCGGCGA
NONE
OsAffx.4769.1.S1_s_at--102--10211Chr06:4200499..4200523 (25 bp)
TATTTTCTGCCTCGGCGATATTTGC
LOC_Os06g08510
OsAffx.4769.1.S1_s_at--780--9451Chr06:4200488..4200512 (25 bp)
TCGGCGATATTTGCCTTCTGCATTG
LOC_Os06g08510
OsAffx.4769.1.S1_s_at--270--31Chr06:4200467..4200491 (25 bp)
ATTGGCAATCTATGGCGCTGTGTGT
LOC_Os06g08510
OsAffx.4769.1.S1_s_at--498--8552Chr01:8654443..8654467 (25 bp)
TGGAGTTGGCGCAGGGATGCTGCTT
NONE
Target Sequence 
AACAGTTGGTGGTGGTTCAGTGACTACTGACCCAAGCCAACCAGTTGTTAAAAAGCGTCTCCCAAAGAAAATTAGACAAG
TTCCTGAATGCTATTTTCTGCCTCGGCGATATTTGCCTTCTGCATTGGCAATCTATGGCGCTGTGTGTGCTGCTGGAGTT
GGCGCAGGGATGCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4769.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis