Browse Element(s) Details


Os.11350.1.S1_x_at

Description gb:AK073840.1
DB_XREF= gi:32983863
TID=Os.11350.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11350 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 30843 putative ubiquitin-specific protease mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033069H15, full insert sequence.
FL= gb:AK073840.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0853011/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08490Os.6257.1.S1_at11/116+4188087..4189564expressed protein
LOC_Os06g08500OsAffx.27510.2.S1_at11/116+4191208..4193417Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g08500OsAffx.27510.2.S1_x_at11/116+4191208..4193417Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g08510OsAffx.4769.1.S1_s_at11/116+4199932..4201852expressed protein
LOC_Os06g08510OsAffx.4769.1.S1_at11/116+4199932..4201852expressed protein
LOC_Os06g08510Os.37590.1.S1_at10/116+4199932..4201852expressed protein
LOC_Os06g08520NANA6+4204533..4205996transposon protein, putative, unclassified
LOC_Os06g08530Os.11350.1.S1_x_at11/116+4212191..4217589Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os06g08540OsAffx.15312.1.S1_at11/116+4223415..4226743formin homology 2 domain-containing protein, putative, expressed
LOC_Os06g08550OsAffx.29297.1.S1_at3/116+4228248..4232158transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g08550OsAffx.24626.1.S1_x_at1/116+4228248..4232158transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11350.1.S1_x_at--705--5131Chr06:4213092..4213116 (25 bp)
GCAAAATTGGGAGTTCCCCGGCATT
LOC_Os06g08530
Os.11350.1.S1_x_at--674--4191Chr06:4213076..4213100 (25 bp)
CCCGGCATTTTACTGTTCTGACAAG
LOC_Os06g08530
Os.11350.1.S1_x_at--967--8991Chr06:4212938..4213066 (25 bp)
TGAAGTTACTGTTCCATGCTGGGAT
LOC_Os06g08530
Os.11350.1.S1_x_at--696--6171Chr06:4212597..4212621 (25 bp)
GAGGAGGCCAACTACATCTCACAGA
LOC_Os06g08530
Os.11350.1.S1_x_at--93--5771Chr06:4212503..4212527 (25 bp)
GACGATTGACGATGCCCATGTTGTA
LOC_Os06g08530
Os.11350.1.S1_x_at--989--6931Chr06:4212481..4212505 (25 bp)
GTAGTAGCAGTGTAGCGCCCATTTT
LOC_Os06g08530
Os.11350.1.S1_x_at--260--10791Chr06:4212444..4212468 (25 bp)
TTGTTGTTCGTTTTGCCGTGTTACA
LOC_Os06g08530
Os.11350.1.S1_x_at--325--7431Chr06:4212427..4212451 (25 bp)
GTGTTACATCTTAGCATTCCGGACA
LOC_Os06g08530
Os.11350.1.S1_x_at--881--71Chr06:4212412..4212436 (25 bp)
ATTCCGGACAAACAGCTGCTGGGAC
LOC_Os06g08530
Os.11350.1.S1_x_at--47--4731Chr06:4212395..4212419 (25 bp)
GCTGGGACTGGACATGCATTCAACT
LOC_Os06g08530
Os.11350.1.S1_x_at--861--4711Chr06:4212342..4212366 (25 bp)
GCTGGAACCTCTGTATTCAATTGTA
LOC_Os06g08530
Target Sequence 
GCAAAATTGGGAGTTCCCCGGCATTTTACTGTTCTGACAAGGGACTTGGCTGAAGTTACTGTTCCATGCTGGGATGATGT
TGCTGTGTCAAATGCTGAGGCAAGAGAGTCAAAACATTCAGAAAGCAAGAGCATTGGATATGTGTTAGATGAATGGGACG
AGGAGTATGACCGTGGAAAGACCAAGAAAATCAGAAATTCAAAGGAAGACTACGGTGGACCAAACCCCTTCCAGGAGGAG
GCCAACTACATCTCACAGAGAAACATGAAACAGAGGACCTATCAACCCAAATCCTGGAAGAAACATGCCCATGTTAGAAG
ATGACAATGACGATTGACGATGCCCATGTTGTAGTAGCAGTGTAGCGCCCATTTTTGAAGAATTCATTTGTTGTTCGTTT
TGCCGTGTTACATCTTAGCATTCCGGACAAACAGCTGCTGGGACTGGACATGCATTCAACTGTTGTTTTCGCCATGTCGT
ATTTAAACAGCTGGAACCTCTGTATTCAATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11350.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis