Browse Element(s) Details


OsAffx.29297.1.S1_at

Description tigr:9636.m02114
TID=OsAffx.29297.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2165011/11hypothetical protein
LOC_Os06g085503/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21590Os.49809.1.S1_x_at11/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.19018.1.S1_at11/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.19018.2.S1_at10/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.48015.1.A1_x_at2/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.53292.1.S1_at1/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.53292.1.S1_x_at1/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.38764.1.S1_x_at1/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21630NANA8+12878597..12879270hypothetical protein
LOC_Os08g21650OsAffx.29297.1.S1_at11/118+12890422..12890983hypothetical protein
LOC_Os08g21650OsAffx.24626.1.S1_x_at1/118+12890422..12890983hypothetical protein
LOC_Os08g21654OsAffx.17098.1.S1_at11/118+12897059..12898002hypothetical protein
LOC_Os08g21660Os.7231.1.S1_s_at11/118+12901844..12908539Eukaryotic translation initiation factor 3 subunit 2, putative, expressed
LOC_Os08g21660Os.7231.1.S1_at11/118+12901844..12908539Eukaryotic translation initiation factor 3 subunit 2, putative, expressed
LOC_Os08g21670OsAffx.28576.1.S1_s_at11/118+12909107..12910163hypothetical protein
LOC_Os08g21670OsAffx.17099.1.S1_x_at10/118+12909107..12910163hypothetical protein
LOC_Os08g21670OsAffx.17099.1.S1_at10/118+12909107..12910163hypothetical protein
LOC_Os08g21680NANA8+12911115..12915059Transposable element protein, putative, Retrotrans_gag

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29297.1.S1_at--978--6372Chr08:12890835..12890859 (25 bp)
GATCCGAAGATCTCGAGCTTGATGG
LOC_Os08g21650
OsAffx.29297.1.S1_at--507--2812Chr08:12890829..12890853 (25 bp)
AAGATCTCGAGCTTGATGGACGTGA
LOC_Os08g21650
OsAffx.29297.1.S1_at--1126--9492Chr08:12890825..12890849 (25 bp)
TCTCGAGCTTGATGGACGTGAAGAA
LOC_Os08g21650
OsAffx.29297.1.S1_at--89--592Chr04:32056786..32056813 (25 bp)
ATCCACGCAGCGCAGAACGATCGCC
NONE
OsAffx.29297.1.S1_at--1022--3191Chr08:12890635..12890659 (25 bp)
CAATGACGATGTTAGTAGCGGCGGT
LOC_Os08g21650
OsAffx.29297.1.S1_at--864--5731Chr08:12890607..12890631 (25 bp)
GACTGGAGCAAGTCCCACCCGCTGT
LOC_Os08g21650
OsAffx.29297.1.S1_at--845--3491Chr08:12890549..12890573 (25 bp)
CATGGCCGTCGAGCTGGCAGGAAGA
LOC_Os08g21650
OsAffx.29297.1.S1_at--608--1312Chr08:27626563..27626587 (25 bp)
AGATGGTGTGAGATGACGCCACATC
NONE
OsAffx.29297.1.S1_at--623--6311Chr08:12890503..12890527 (25 bp)
GATGACGCCACATCTGATGAGGGAA
LOC_Os08g21650
OsAffx.29297.1.S1_at--839--9451Chr08:12890491..12890515 (25 bp)
TCTGATGAGGGAAACGATACGGCGT
LOC_Os08g21650
OsAffx.29297.1.S1_at--540--2571Chr08:12890479..12890503 (25 bp)
AACGATACGGCGTGAGATAGGAGAT
LOC_Os08g21650
Target Sequence 
GATCCGAAGATCTCGAGCTTGATGGACGTGAAGAAGCTGTCCAAGGAGGCGTGCATCCACGCAGCGCAGAACGATCGCCT
CCCGCTCCGCGTCGTCTTGCAGGTGCTCTTCTTCGAGCAGCTGCGCGCGGCGGTGGGGGCCAGCCCGGCGGTAGTGAGCG
GCGGCATTGCGCGGCATCTGGTGGAGGAGGAAGATGAGGACAATGACGATGTTAGTAGCGGCGGTGGGGACTGGAGCAAG
TCCCACCCGCTGTCGACGCCAACCTCCTCAGCCCGCGAGCGCTCGCCATGGCCGTCGAGCTGGCAGGAAGAAAGAAGAGG
GAGATGGTGTGAGATGACGCCACATCTGATGAGGGAAACGATACGGCGTGAGATAGGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis