Browse Element(s) Details


OsAffx.17098.1.S1_at

Description tigr:9636.m02115
TID=OsAffx.17098.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2165411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21630NANA8+12878597..12879270hypothetical protein
LOC_Os08g21650OsAffx.29297.1.S1_at11/118+12890422..12890983hypothetical protein
LOC_Os08g21650OsAffx.24626.1.S1_x_at1/118+12890422..12890983hypothetical protein
LOC_Os08g21654OsAffx.17098.1.S1_at11/118+12897059..12898002hypothetical protein
LOC_Os08g21660Os.7231.1.S1_s_at11/118+12901844..12908539Eukaryotic translation initiation factor 3 subunit 2, putative, expressed
LOC_Os08g21660Os.7231.1.S1_at11/118+12901844..12908539Eukaryotic translation initiation factor 3 subunit 2, putative, expressed
LOC_Os08g21670OsAffx.28576.1.S1_s_at11/118+12909107..12910163hypothetical protein
LOC_Os08g21670OsAffx.17099.1.S1_x_at10/118+12909107..12910163hypothetical protein
LOC_Os08g21670OsAffx.17099.1.S1_at10/118+12909107..12910163hypothetical protein
LOC_Os08g21680NANA8+12911115..12915059Transposable element protein, putative, Retrotrans_gag
LOC_Os08g21690NANA8+12922825..12929089retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17098.1.S1_at--637--7071Chr08:12897666..12897690 (25 bp)
GTCAAGCGTCGACCAGATTACTGAT
LOC_Os08g21654
OsAffx.17098.1.S1_at--440--811Chr08:12897572..12897648 (25 bp)
ATGGTGGCCCTTGGTGACTCTTCAA
LOC_Os08g21654
OsAffx.17098.1.S1_at--1128--10491Chr08:12897552..12897576 (25 bp)
TTCAAGACTTCAGATTCCCATCCAT
LOC_Os08g21654
OsAffx.17098.1.S1_at--917--3611Chr08:12897504..12897528 (25 bp)
CTTGTATGTCTTTTGGCGAGGCTGC
LOC_Os08g21654
OsAffx.17098.1.S1_at--60--4631Chr08:12897489..12897513 (25 bp)
GCGAGGCTGCCTACATGTTTGCTGG
LOC_Os08g21654
OsAffx.17098.1.S1_at--278--3251Chr08:12897461..12897485 (25 bp)
CAACCTATCAGCTGAACCCTTTGAG
LOC_Os08g21654
OsAffx.17098.1.S1_at--424--1531Chr08:12897426..12897450 (25 bp)
AGCATTTCTATGATGGTTTCCCAAA
LOC_Os08g21654
OsAffx.17098.1.S1_at--378--2431Chr08:12897300..12897324 (25 bp)
AAAAGAACTTCATATCGGCCCTCTT
LOC_Os08g21654
OsAffx.17098.1.S1_at--918--111Chr08:12897268..12897292 (25 bp)
ATTCTTCCTACTGGAGTATCCCAAG
LOC_Os08g21654
OsAffx.17098.1.S1_at--120--8531Chr08:12897185..12897209 (25 bp)
TGGACTAGGCCAACTTCCCTTGAAT
LOC_Os08g21654
OsAffx.17098.1.S1_at--835--7731Chr08:12897117..12897141 (25 bp)
GGTGGTCTCGGCAACTCGGCAAAAA
LOC_Os08g21654
Target Sequence 
GTCAAGCGTCGACCAGATTACTGATGAACTCTTCAGTCAAACATGGTGGCCCTTGGTGACTCTTCAAGACTTCAGATTCC
CATCCATCGAGGACAATGAGGACGACAGACCTTGTATGTCTTTTGGCGAGGCTGCCTACATGTTTGCTGGCTCCAACCTA
TCAGCTGAACCCTTTGAGCATTGGTTCAAGCATTTCTATGATGGTTTCCCAAACGATACAGAAATGTGGTATGCCTATGA
AAATTTCGAAGACTTTGAATGTCCAGAGGACTTGAGGATAGATGATTTGAACAATGAGTTCTATCCTGAGAACAAAAAGA
ACTTCATATCGGCCCTCTTACCATGCATTCTTCCTACTGGAGTATCCCAAGGTCGATTCACTCAGAATTCATATGAATTC
TATCATCCAATGATAGCAGCAAGACAATTTGGACTAGGCCAACTTCCCTTGAATCTCCATTTCTCAACAAAAATCCAGGC
TAGAGATATAGTGTGGGGGTGGTCTCGGCAACTCGGCAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis