Browse Element(s) Details


OsAffx.17099.1.S1_at

Description tigr:9636.m02117
TID=OsAffx.17099.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2167010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21650OsAffx.29297.1.S1_at11/118+12890422..12890983hypothetical protein
LOC_Os08g21650OsAffx.24626.1.S1_x_at1/118+12890422..12890983hypothetical protein
LOC_Os08g21654OsAffx.17098.1.S1_at11/118+12897059..12898002hypothetical protein
LOC_Os08g21660Os.7231.1.S1_s_at11/118+12901844..12908539Eukaryotic translation initiation factor 3 subunit 2, putative, expressed
LOC_Os08g21660Os.7231.1.S1_at11/118+12901844..12908539Eukaryotic translation initiation factor 3 subunit 2, putative, expressed
LOC_Os08g21670OsAffx.28576.1.S1_s_at11/118+12909107..12910163hypothetical protein
LOC_Os08g21670OsAffx.17099.1.S1_x_at10/118+12909107..12910163hypothetical protein
LOC_Os08g21670OsAffx.17099.1.S1_at10/118+12909107..12910163hypothetical protein
LOC_Os08g21680NANA8+12911115..12915059Transposable element protein, putative, Retrotrans_gag
LOC_Os08g21690NANA8+12922825..12929089retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0006979biological_processresponse to oxidative stress
GO:0009611biological_processresponse to wounding
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0045548molecular_functionphenylalanine ammonia-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17099.1.S1_at--1--7911Chr08:12909324..12909348 (25 bp)
GGTTCGTCTGCAAGGAGCTCAGGAC
LOC_Os08g21670
OsAffx.17099.1.S1_at--585--6711Chr08:12909325..12909349 (25 bp)
GTTCGTCTGCAAGGAGCTCAGGACA
LOC_Os08g21670
OsAffx.17099.1.S1_at--409--10611Chr08:12909326..12909350 (25 bp)
TTCGTCTGCAAGGAGCTCAGGACAG
LOC_Os08g21670
OsAffx.17099.1.S1_at--165--9411Chr08:12909327..12909351 (25 bp)
TCGTCTGCAAGGAGCTCAGGACAGA
LOC_Os08g21670
OsAffx.17099.1.S1_at--1--4031Chr08:12909328..12909352 (25 bp)
CGTCTGCAAGGAGCTCAGGACAGAG
LOC_Os08g21670
OsAffx.17099.1.S1_at--327--3851Chr08:12909331..12909355 (25 bp)
CTGCAAGGAGCTCAGGACAGAGTAC
LOC_Os08g21670
OsAffx.17099.1.S1_at--47--3991Chr08:12909361..12909385 (25 bp)
CGGGAAGAAGATCGACGCGGTCGCC
LOC_Os08g21670
OsAffx.17099.1.S1_at--177--1291Chr08:12909369..12909389 (21 bp)
AGATCGACGCGGTCGCCCGGTCGCA
LOC_Os08g21670
OsAffx.17099.1.S1_at--783--4671NONE
GCGGTCGCCCGGTCGCAATGTTCGA
NONE
OsAffx.17099.1.S1_at--194--7831Chr08:12909905..12909929 (25 bp)
GGTCACCTGGCGAGGATGTGAACAA
LOC_Os08g21670
OsAffx.17099.1.S1_at--55--9331Chr08:12909938..12910118 (25 bp)
TCGCCATGAACCAGGATCGGGTGGA
LOC_Os08g21670
Target Sequence 
GGTTCGTCTGCAAGGAGCTCAGGACAGAGTACTTGACCGGGAAGAAGATCGACGCGGTCGCCCGGTCGCAATGTTCGAGG
AGGAGCTCCGCGCGGCGCTGCCCAGGGAAGTGGAGGCTACCCCGTGCGGCCGTGGAGAACGGCACCGCCACAAAGGCGAA
CAGGATCACCGAGTGCAGGTCGTACTCGCTCTACCGGTTCGTCCGCAAGGAGCTCGGGATAGAGTACTTGACTGGGGAGA
AGATCGACGCGGTCACCTGGCGAGGATGTGAACAAGGTGTTCGTCGCCATGAACCAGGATCGGGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17099.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis