Browse Element(s) Details


Os.7231.1.S1_s_at

Description gb:AK122060.1
DB_XREF= gi:37991706
TID=Os.7231.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7231 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115B09, full insert sequence.
FL= gb:AK122060.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2166011/11Eukaryotic translation initiation factor 3 subunit 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21630NANA8+12878597..12879270hypothetical protein
LOC_Os08g21650OsAffx.29297.1.S1_at11/118+12890422..12890983hypothetical protein
LOC_Os08g21650OsAffx.24626.1.S1_x_at1/118+12890422..12890983hypothetical protein
LOC_Os08g21654OsAffx.17098.1.S1_at11/118+12897059..12898002hypothetical protein
LOC_Os08g21660Os.7231.1.S1_s_at11/118+12901844..12908539Eukaryotic translation initiation factor 3 subunit 2, putative, expressed
LOC_Os08g21660Os.7231.1.S1_at11/118+12901844..12908539Eukaryotic translation initiation factor 3 subunit 2, putative, expressed
LOC_Os08g21670OsAffx.28576.1.S1_s_at11/118+12909107..12910163hypothetical protein
LOC_Os08g21670OsAffx.17099.1.S1_x_at10/118+12909107..12910163hypothetical protein
LOC_Os08g21670OsAffx.17099.1.S1_at10/118+12909107..12910163hypothetical protein
LOC_Os08g21680NANA8+12911115..12915059Transposable element protein, putative, Retrotrans_gag
LOC_Os08g21690NANA8+12922825..12929089retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7231.1.S1_s_at--149--471Chr08:12902039..12902063 (25 bp)
ATCTCCGTCGTGTGGAGAGTCTCAG
LOC_Os08g21660
Os.7231.1.S1_s_at--1086--8531Chr08:12902027..12902051 (25 bp)
TGGAGAGTCTCAGGTGCAGTGTTTA
LOC_Os08g21660
Os.7231.1.S1_s_at--856--7771Chr08:12902015..12902039 (25 bp)
GGTGCAGTGTTTAGCAACTGATGGA
LOC_Os08g21660
Os.7231.1.S1_s_at--1115--1471Chr08:12902003..12902027 (25 bp)
AGCAACTGATGGAGTACTTGTCGGA
LOC_Os08g21660
Os.7231.1.S1_s_at--1008--6071Chr08:12901992..12902016 (25 bp)
GAGTACTTGTCGGACTTTCTTGTTG
LOC_Os08g21660
Os.7231.1.S1_s_at--1041--6991Chr08:12901990..12902014 (25 bp)
GTACTTGTCGGACTTTCTTGTTGCA
LOC_Os08g21660
Os.7231.1.S1_s_at--539--8811Chr08:12901972..12901996 (25 bp)
TGTTGCACTGGACATCCAGCTTTAT
LOC_Os08g21660
Os.7231.1.S1_s_at--171--8131Chr08:12901963..12901987 (25 bp)
GGACATCCAGCTTTATAGATGCTTG
LOC_Os08g21660
Os.7231.1.S1_s_at--575--4351Chr08:12901957..12901981 (25 bp)
CCAGCTTTATAGATGCTTGAGAGAT
LOC_Os08g21660
Os.7231.1.S1_s_at--841--10551Chr08:12901857..12901881 (25 bp)
TTCTTCCATATATCAAGTTTTGGGC
LOC_Os08g21660
Os.7231.1.S1_s_at--166--4331Chr08:12901852..12901876 (25 bp)
CCATATATCAAGTTTTGGGCAGATG
LOC_Os08g21660
Target Sequence 
ATCTCCGTCGTGTGGAGAGTCTCAGGTGCAGTGTTTAGCAACTGATGGAGTACTTGTCGGACTTTCTTGTTGCACTGGAC
ATCCAGCTTTATAGATGCTTGAGAGATTTTGTACATTCAGCAATCGAAGGCTCCTTATACTGCAAAACTAGCTTAATTTG
CTTTTCATCATTCTTGGTTCACTTCTTCCATATATCAAGTTTTGGGCAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7231.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis