Browse Element(s) Details


OsAffx.15315.1.S1_at

Description tigr:9634.m00811
TID=OsAffx.15315.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glutathione peroxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0867011/11Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08640OsAffx.27513.1.S1_s_at11/116+4300561..4302106Transferase family protein, expressed
LOC_Os06g08650OsAffx.27514.1.S1_at11/116+4312313..4314334pentatricopeptide, putative, expressed
LOC_Os06g08660Os.50316.1.S1_s_at11/116+4314724..4318250pentatricopeptide, putative, expressed
LOC_Os06g08660Os.50316.1.S1_at11/116+4314724..4318250pentatricopeptide, putative, expressed
LOC_Os06g08670Os.7552.1.S1_at11/116+4320684..4324284Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor, putative, expressed
LOC_Os06g08670OsAffx.15315.1.S1_at11/116+4320684..4324284Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor, putative, expressed
LOC_Os06g08680Os.49907.1.S1_at11/116+4328667..4329598expressed protein
LOC_Os06g08690OsAffx.27515.1.S1_at11/116+4330517..4333807Leucine Rich Repeat family protein, expressed
LOC_Os06g08690OsAffx.27515.1.S1_x_at11/116+4330517..4333807Leucine Rich Repeat family protein, expressed
LOC_Os06g08700OsAffx.26548.1.S1_at3/116+4335267..4335824retrotransposon protein, putative, unclassified
LOC_Os06g08710OsAffx.27515.2.S1_at11/116+4338308..4341792Leucine Rich Repeat family protein, expressed
LOC_Os06g08710OsAffx.27515.1.S1_x_at3/116+4338308..4341792Leucine Rich Repeat family protein, expressed
LOC_Os06g08720Os.11697.1.S1_at11/116+4346160..4352378Serine carboxypeptidase II-2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004602molecular_functionglutathione peroxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15315.1.S1_at--150--6731Chr06:4321214..4321238 (25 bp)
GTTCTGTTGTTGAACGTGTTTGCAA
LOC_Os06g08670
OsAffx.15315.1.S1_at--275--1911Chr06:4321227..4321251 (25 bp)
ACGTGTTTGCAATTGGCTGGGTCAG
LOC_Os06g08670
OsAffx.15315.1.S1_at--4--7651Chr06:4323193..4323217 (25 bp)
GGGAGCCCTTAGATATACCTATTTG
LOC_Os06g08670
OsAffx.15315.1.S1_at--118--6511Chr06:4323204..4323228 (25 bp)
GATATACCTATTTGCACCAGAGCCC
LOC_Os06g08670
OsAffx.15315.1.S1_at--647--9971Chr06:4323208..4323232 (25 bp)
TACCTATTTGCACCAGAGCCCAGAT
LOC_Os06g08670
OsAffx.15315.1.S1_at--915--10191Chr06:4323212..4323236 (25 bp)
TATTTGCACCAGAGCCCAGATGGCC
LOC_Os06g08670
OsAffx.15315.1.S1_at--630--9031Chr06:4323216..4323240 (25 bp)
TGCACCAGAGCCCAGATGGCCTGAG
LOC_Os06g08670
OsAffx.15315.1.S1_at--465--3431Chr06:4323228..4323252 (25 bp)
CAGATGGCCTGAGGCTGCCTATGGA
LOC_Os06g08670
OsAffx.15315.1.S1_at--982--3851Chr06:4323236..4323260 (25 bp)
CTGAGGCTGCCTATGGAGTTTGCAT
LOC_Os06g08670
OsAffx.15315.1.S1_at--760--4451Chr06:4323244..4323268 (25 bp)
GCCTATGGAGTTTGCATGGGCTCTA
LOC_Os06g08670
OsAffx.15315.1.S1_at--848--6852Chr06:4323253..4323277 (25 bp)
GTTTGCATGGGCTCTATTGGCTATT
LOC_Os06g08670
Target Sequence 
GTTCTGTTGTTGAACGTGTTTGCAATTGGCTGGGTCAGGACATTGATGGAAAAGATGTTGCGCTTAGCAAGTTCAAGGGA
AGGGCGCTGCTAATTGTTAATGTTGCATCTCAGTGTGGGCTGACAACAGCAAATTACACGGAACTATCTCATCTTTATGA
GAAGTACAAGACTCAAGGATTTGAGATTCTTGCATTTCCTTGCAATCAGTTTGGTGCACAAGAACCTGGGTCAAACCCGC
AGATTAAGCAGTTTGCTTGTACAAGGTTTAAAGCTGAATTTCCTATTTTTGACAAGGTTGATGTCAACGGGCCTAACACA
GCCCCTATTTATAAGTTTCTTAAGTCGAGTGCTGGAGGATTTTTGGGTGATCTTGTGAAATGGAATTTTGAGAAGTTCTT
GGTGGACAAAACTGGAAAAGTTGTTGAGAGATACCCACCTACAACTTCACCATTCCAGATTGAGTGTTGGGGAGCCCTTA
GATATACCTATTTGCACCAGAGCCCAGATGGCCTGAGGCTGCCTATGGAGTTTGCATGGGCTCTATTGGCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis