Browse Element(s) Details


Os.11697.1.S1_at

Description gb:AK066243.1
DB_XREF= gi:32976261
TID=Os.11697.1
CNT=34
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.11697 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098N22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050J23, full insert sequence.
FL= gb:AK067247.1 gb:AK066243.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0872011/11Serine carboxypeptidase II-2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08670Os.7552.1.S1_at11/116+4320684..4324284Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor, putative, expressed
LOC_Os06g08670OsAffx.15315.1.S1_at11/116+4320684..4324284Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor, putative, expressed
LOC_Os06g08680Os.49907.1.S1_at11/116+4328667..4329598expressed protein
LOC_Os06g08690OsAffx.27515.1.S1_at11/116+4330517..4333807Leucine Rich Repeat family protein, expressed
LOC_Os06g08690OsAffx.27515.1.S1_x_at11/116+4330517..4333807Leucine Rich Repeat family protein, expressed
LOC_Os06g08700OsAffx.26548.1.S1_at3/116+4335267..4335824retrotransposon protein, putative, unclassified
LOC_Os06g08710OsAffx.27515.2.S1_at11/116+4338308..4341792Leucine Rich Repeat family protein, expressed
LOC_Os06g08710OsAffx.27515.1.S1_x_at3/116+4338308..4341792Leucine Rich Repeat family protein, expressed
LOC_Os06g08720Os.11697.1.S1_at11/116+4346160..4352378Serine carboxypeptidase II-2 precursor, putative, expressed
LOC_Os06g08730OsAffx.15316.1.S1_at11/116+4361881..4369595expressed protein
LOC_Os06g08740Os.15186.1.S1_at11/116+4369967..4375384expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004187molecular_functioncarboxypeptidase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11697.1.S1_at--888--6471Chr06:4347065..4347089 (25 bp)
GATACAGCATCAATGCCCTCAAACT
LOC_Os06g08720
Os.11697.1.S1_at--802--3231Chr06:4347038..4347062 (25 bp)
CAACGGTAACCCCTTGGAATGCTTG
LOC_Os06g08720
Os.11697.1.S1_at--369--8531Chr06:4346593..4346617 (25 bp)
TGGACTCAAGGGTACAAGGGACTCA
LOC_Os06g08720
Os.11697.1.S1_at--1093--2871Chr06:4346578..4346602 (25 bp)
AAGGGACTCAACTTCGTGACTGTGA
LOC_Os06g08720
Os.11697.1.S1_at--7--711Chr06:4346541..4346565 (25 bp)
ATGAGGTTCCTCTGCATAGGCCCAA
LOC_Os06g08720
Os.11697.1.S1_at--200--2411Chr06:4346518..4346542 (25 bp)
AAACAGGCTCTAATTCTCATCAAAT
LOC_Os06g08720
Os.11697.1.S1_at--352--3071Chr06:4346496..4346520 (25 bp)
AATCATTCTTGGCTGGGAGCCCAAT
LOC_Os06g08720
Os.11697.1.S1_at--1032--1651Chr06:4346479..4346503 (25 bp)
AGCCCAATGCCCAGTGTTCAAGATT
LOC_Os06g08720
Os.11697.1.S1_at--788--6671Chr06:4346382..4346406 (25 bp)
GTTGCTAGTATCACATGGAACTCGT
LOC_Os06g08720
Os.11697.1.S1_at--53--7291Chr06:4346294..4346318 (25 bp)
GTGCCACGAATCGACACTGTCTGTT
LOC_Os06g08720
Os.11697.1.S1_at--461--1891Chr06:4346226..4346250 (25 bp)
ACGTTCACATTGTTGTCGTACAGGA
LOC_Os06g08720
Target Sequence 
GATACAGCATCAATGCCCTCAAACTTCCAACGGTAACCCCTTGGAATGCTTGGTATGACGATGATGGTGAGGTTGGTGGC
TGGACTCAAGGGTACAAGGGACTCAACTTCGTGACTGTGAGGGGCGCAGGTCATGAGGTTCCTCTGCATAGGCCCAAACA
GGCTCTAATTCTCATCAAATCATTCTTGGCTGGGAGCCCAATGCCCAGTGTTCAAGATTTTTACAGTGATGTGTAACATA
TTTTGGCTACAATTATATATTACCAAGATCACAAAAGGTAACTCAGACGGGGTTGCTAGTATCACATGGAACTCGTACCA
TATATTGGTAACAATTCTTCCCTAAATAAAATAGGGAACAAAATCATGAAATAGTTTTCGTGCCACGAATCGACACTGTC
TGTTGATATTGATATGAACCTAAGACAAAAGTATTAATCAAGGGTGAACGTTCACATTGTTGTCGTACAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis