Browse Element(s) Details


OsAffx.15316.1.S1_at

Description tigr:9634.m00818
TID=OsAffx.15316.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0873011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08710OsAffx.27515.2.S1_at11/116+4338308..4341792Leucine Rich Repeat family protein, expressed
LOC_Os06g08710OsAffx.27515.1.S1_x_at3/116+4338308..4341792Leucine Rich Repeat family protein, expressed
LOC_Os06g08720Os.11697.1.S1_at11/116+4346160..4352378Serine carboxypeptidase II-2 precursor, putative, expressed
LOC_Os06g08730OsAffx.15316.1.S1_at11/116+4361881..4369595expressed protein
LOC_Os06g08740Os.15186.1.S1_at11/116+4369967..4375384expressed protein
LOC_Os06g08750Os.14290.1.S1_at11/116+4378814..4382419integral membrane transporter family protein, putative, expressed
LOC_Os06g08760OsAffx.27516.1.S1_at11/116+4383884..4384111hypothetical protein
LOC_Os06g08770Os.54465.1.S1_at11/116+4387234..4390752RuvB-like 2, putative, expressed
LOC_Os06g08780OsAffx.15317.1.S1_at11/116+4391767..4392090hypothetical protein
LOC_Os06g08790Os.273.1.S1_at11/116+4392377..4400130origin recognition complex subunit 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15316.1.S1_at--315--1651Chr06:4367994..4368018 (25 bp)
AGCGCATGCCTTGGTTCAGCAGATA
LOC_Os06g08730
OsAffx.15316.1.S1_at--517--6751Chr06:4368007..4368031 (25 bp)
GTTCAGCAGATATCAGCCCTTCAAT
LOC_Os06g08730
OsAffx.15316.1.S1_at--867--5471Chr06:4368055..4368079 (25 bp)
GAACTTGAAAGTGCTCTGCCAGCCG
LOC_Os06g08730
OsAffx.15316.1.S1_at--1126--2511Chr06:4368862..4368886 (25 bp)
AACTTCTATTTGCATCATCGACGAC
LOC_Os06g08730
OsAffx.15316.1.S1_at--721--10871Chr06:4369045..4369066 (22 bp)
TTGGCCTCTGATGCGAGCACTCGAT
LOC_Os06g08730
OsAffx.15316.1.S1_at--977--1831Chr06:4369115..4369139 (25 bp)
ACGAAGGCTCGCACCCAAAAGATAA
LOC_Os06g08730
OsAffx.15316.1.S1_at--114--1111Chr06:4369286..4369310 (25 bp)
AGTGTTCGTCGATTTCTTCAGCAAC
LOC_Os06g08730
OsAffx.15316.1.S1_at--203--2851Chr06:4369330..4369354 (25 bp)
AAGTCAGAGAGCTTACCTCCCGTGT
LOC_Os06g08730
OsAffx.15316.1.S1_at--1072--4191Chr06:4369348..4369372 (25 bp)
CCCGTGTGAAAGCTCTCCAGGAATA
LOC_Os06g08730
OsAffx.15316.1.S1_at--791--251Chr06:4369386..4369483 (25 bp)
ATATCCCTCGTCTAGTTTGCATTTG
LOC_Os06g08730
OsAffx.15316.1.S1_at--44--4791Chr06:4369523..4369547 (25 bp)
GCTCGCAATGATGCTGTTGCTTGCA
LOC_Os06g08730
Target Sequence 
AGCGCATGCCTTGGTTCAGCAGATATCAGCCCTTCAATCTGATTTGCTTTCTCTTCAGTCTGAACTTGAAAGTGCTCTGC
CAGCCGATCGCAAAAGATGTATCAATGAACTATGCACCCTAATTCAAACAGTGGAACAACTTCTATTTGCATCATCGACG
ACTGCAGAACCAATATTGACACCTTGGCCTCTGATGCGAGCACTCGATGATATGGAAAATGCCAACGCACAAGTTGAAGT
TTCTGTGGAAGAAGTAACGAAGGCTCGCACCCAAAAGATAAAGATCTTTGAGAATCGCGCTCATGAAGTTGGGAGGGAGA
GGCAAGTGTTCGTCGATTTCTTCAGCAACCCCGAGCGACTCAAGAATCAAGTCAGAGAGCTTACCTCCCGTGTGAAAGCT
CTCCAGGAATAAATAGATAGATAGATATCCCTCGTCTAGTTTGCATTTGTGTGCCAGGTCGTCCCGCGAAATGGGAAGCA
ACAGCCAAGCTCGCAATGATGCTGTTGCTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis