Browse Element(s) Details


Os.54465.1.S1_at

Description gb:AK105241.1
DB_XREF= gi:32990450
TID=Os.54465.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54465 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-D06, full insert sequence.
FL= gb:AK105241.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0877011/11RuvB-like 2, putative, expressed
LOC_Os07g392903/11RuvB-like 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08730OsAffx.15316.1.S1_at11/116+4361881..4369595expressed protein
LOC_Os06g08740Os.15186.1.S1_at11/116+4369967..4375384expressed protein
LOC_Os06g08750Os.14290.1.S1_at11/116+4378814..4382419integral membrane transporter family protein, putative, expressed
LOC_Os06g08760OsAffx.27516.1.S1_at11/116+4383884..4384111hypothetical protein
LOC_Os06g08770Os.54465.1.S1_at11/116+4387234..4390752RuvB-like 2, putative, expressed
LOC_Os06g08780OsAffx.15317.1.S1_at11/116+4391767..4392090hypothetical protein
LOC_Os06g08790Os.273.1.S1_at11/116+4392377..4400130origin recognition complex subunit 1, putative, expressed
LOC_Os06g08800OsAffx.4772.1.S1_at11/116+4400652..4402236lmbW protein, putative
LOC_Os06g08810Os.54870.1.S1_at10/116+4403147..4405035NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g08820OsAffx.15318.1.S1_at11/116+4409057..4410391Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003678molecular_functionDNA helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54465.1.S1_at--706--2391Chr06:4387799..4387823 (25 bp)
AAACTACCGATCACCACATGGGATA
LOC_Os06g08770
Os.54465.1.S1_at--121--1771Chr06:4387772..4387796 (25 bp)
ACCTGATTTCCTTGATCGTCTGTTA
LOC_Os06g08770
Os.54465.1.S1_at--70--8792Chr07:23523109..23523130 (22 bp)
TGTTAATCATCACGACACAGCCTTA
LOC_Os07g39290
Os.54465.1.S1_at--394--5632Chr07:23523119..23523143 (25 bp)
GACACAGCCTTACACCGAGGATGAT
LOC_Os07g39290
Os.54465.1.S1_at--564--3431Chr06:4387662..4387686 (25 bp)
CAGATGCTAAGGTTTTGCTCACAAA
LOC_Os06g08770
Os.54465.1.S1_at--877--8051Chr06:4387628..4387652 (25 bp)
GGAGACGTCCCTGAGGTATGCTATC
LOC_Os06g08770
Os.54465.1.S1_at--162--10131Chr06:4387612..4387636 (25 bp)
TATGCTATCCACCTGATCACTTCGG
LOC_Os06g08770
Os.54465.1.S1_at--853--10611Chr06:4387592..4387616 (25 bp)
TTCGGCTGCATTAGCTTGCCAGAAA
LOC_Os06g08770
Os.54465.1.S1_at--588--351Chr06:4387537..4387561 (25 bp)
ATAAGCAGGGTCTACCAGCTGTTCC
LOC_Os06g08770
Os.54465.1.S1_at--523--10172Chr07:23523384..23523408 (25 bp)
TATCAGAGCCAGTACATGTTCAATG
LOC_Os07g39290
Os.54465.1.S1_at--1015--6351Chr06:4387429..4387453 (25 bp)
GATGCCATGCAGTCTTAGTGGGATA
LOC_Os06g08770
Target Sequence 
AAACTACCGATCACCACATGGGATACCACCTGATTTCCTTGATCGTCTGTTAATCATCACGACACAGCCTTACACCGAGG
ATGATATCCGGAAGATCCTAGACATCAGGTGCGATGAAGAAGATGTGGAAATGTCTGCAGATGCTAAGGTTTTGCTCACA
AAGATAGGAGTGGAGACGTCCCTGAGGTATGCTATCCACCTGATCACTTCGGCTGCATTAGCTTGCCAGAAACGCAAGGG
TAAGGTTGTGGAGATGGAGGATATAAGCAGGGTCTACCAGCTGTTCCTGGACGTCNAGAGATCGACGCAGTACTTGATGG
AGTATCAGAGCCAGTACATGTTCAATGAAGTGCCGGGTGAAGCAGGAGATGATGCCATGCAGTCTTAGTGGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis