Browse Element(s) Details


OsAffx.15318.1.S1_at

Description tigr:9634.m00829
TID=OsAffx.15318.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0882011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08760OsAffx.27516.1.S1_at11/116+4383884..4384111hypothetical protein
LOC_Os06g08770Os.54465.1.S1_at11/116+4387234..4390752RuvB-like 2, putative, expressed
LOC_Os06g08780OsAffx.15317.1.S1_at11/116+4391767..4392090hypothetical protein
LOC_Os06g08790Os.273.1.S1_at11/116+4392377..4400130origin recognition complex subunit 1, putative, expressed
LOC_Os06g08800OsAffx.4772.1.S1_at11/116+4400652..4402236lmbW protein, putative
LOC_Os06g08810Os.54870.1.S1_at10/116+4403147..4405035NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g08820OsAffx.15318.1.S1_at11/116+4409057..4410391Zinc finger, C3HC4 type family protein
LOC_Os06g08830OsAffx.15319.1.S1_at10/116+4417695..4419368UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g08840Os.7772.1.S1_at11/116+4427667..4431315RNA recognition motif family protein, expressed
LOC_Os06g08840Os.7772.2.A1_at11/116+4427667..4431315RNA recognition motif family protein, expressed
LOC_Os06g08840Os.7772.2.A1_x_at11/116+4427667..4431315RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15318.1.S1_at--372--6431Chr06:4409849..4409873 (25 bp)
GATCTTGGACAGAGACGGTGCTTCT
LOC_Os06g08820
OsAffx.15318.1.S1_at--439--8531Chr06:4409854..4409878 (25 bp)
TGGACAGAGACGGTGCTTCTCCATG
LOC_Os06g08820
OsAffx.15318.1.S1_at--832--7231Chr06:4409921..4409945 (25 bp)
GTCGCCGTCAGGACGCCCAAGCGGA
LOC_Os06g08820
OsAffx.15318.1.S1_at--65--8731Chr06:4409985..4410009 (25 bp)
TGTCGGAGTGCGACTTCGCGGGCTC
LOC_Os06g08820
OsAffx.15318.1.S1_at--165--491Chr06:4410110..4410134 (25 bp)
ATCTGGATGACGTCAGCCACTAGGA
LOC_Os06g08820
OsAffx.15318.1.S1_at--163--6311Chr06:4410115..4410139 (25 bp)
GATGACGTCAGCCACTAGGAAGGAA
LOC_Os06g08820
OsAffx.15318.1.S1_at--482--7111Chr06:4410121..4410145 (25 bp)
GTCAGCCACTAGGAAGGAAGATGTC
LOC_Os06g08820
OsAffx.15318.1.S1_at--1103--1471Chr06:4410218..4410242 (25 bp)
AGCAAGAAGCATGGCGGGATCAACG
LOC_Os06g08820
OsAffx.15318.1.S1_at--628--2711Chr06:4410224..4410248 (25 bp)
AAGCATGGCGGGATCAACGACGAGC
LOC_Os06g08820
OsAffx.15318.1.S1_at--427--4691Chr06:4410267..4410291 (25 bp)
GCGGCAATGGCGACTCGTCTCTCGC
LOC_Os06g08820
OsAffx.15318.1.S1_at--655--871Chr06:4410273..4410297 (25 bp)
ATGGCGACTCGTCTCTCGCCGACGA
LOC_Os06g08820
Target Sequence 
GATCTTGGACAGAGACGGTGCTTCTCCATGGGATCCTACGAGTACGTCATGGACGAGCACGCCGCGCTCCGCGTCGCCGT
CAGGACGCCCAAGCGGAGGCCGCCGGCGAGGTCGAGGTCTCGCCGCCGGCTCGCGCTGTCGGAGTGCGACTTCGCGGGCT
CCGCCTCCAAGAAGGGCGCGTGGGAAGCGGCGGTGATAGAGGCCGCGTCGGCGGACGCCGCGGCGGCGAGGCTGAACAGG
GACAGCTTCTCCGTGTCCAAGATCTGGATGACGTCAGCCACTAGGAAGGAAGATGTCCGGACGGCGGCGGAATTGGCCGG
CGGAGGGAGGCGTGCGGCGTCGTTCCGGTGGCCGGCGATGGCCGAGGCCAGCAAGAAGCATGGCGGGATCAACGACGAGC
GCCGCGACGTCGAGGCCGGCGGCAATGGCGACTCGTCTCTCGCCGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis