Browse Element(s) Details


OsAffx.4772.1.S1_at

Description tigr:9634.m00826
TID=OsAffx.4772.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0880011/11lmbW protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08750Os.14290.1.S1_at11/116+4378814..4382419integral membrane transporter family protein, putative, expressed
LOC_Os06g08760OsAffx.27516.1.S1_at11/116+4383884..4384111hypothetical protein
LOC_Os06g08770Os.54465.1.S1_at11/116+4387234..4390752RuvB-like 2, putative, expressed
LOC_Os06g08780OsAffx.15317.1.S1_at11/116+4391767..4392090hypothetical protein
LOC_Os06g08790Os.273.1.S1_at11/116+4392377..4400130origin recognition complex subunit 1, putative, expressed
LOC_Os06g08800OsAffx.4772.1.S1_at11/116+4400652..4402236lmbW protein, putative
LOC_Os06g08810Os.54870.1.S1_at10/116+4403147..4405035NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g08820OsAffx.15318.1.S1_at11/116+4409057..4410391Zinc finger, C3HC4 type family protein
LOC_Os06g08830OsAffx.15319.1.S1_at10/116+4417695..4419368UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4772.1.S1_at--714--571Chr06:4401126..4401235 (25 bp)
ATCCAGGGTTGCTACGTGGTCGCCG
LOC_Os06g08800
OsAffx.4772.1.S1_at--992--4551Chr06:4401337..4401773 (25 bp)
GCGCCCTCCTTGAAGGCAGATTTGG
LOC_Os06g08800
OsAffx.4772.1.S1_at--62--1271Chr06:4401766..4401790 (25 bp)
AGATTTGGTGTTCCTTTCACCGCCA
LOC_Os06g08800
OsAffx.4772.1.S1_at--114--7651Chr06:4401793..4401817 (25 bp)
GGGAGGGCCATCCTACAGCCAAGCT
LOC_Os06g08800
OsAffx.4772.1.S1_at--513--9851Chr06:4401806..4401830 (25 bp)
TACAGCCAAGCTCAAGTTTACTCCC
LOC_Os06g08800
OsAffx.4772.1.S1_at--956--1191Chr06:4401820..4401844 (25 bp)
AGTTTACTCCCTTGATATGCTGAAG
LOC_Os06g08800
OsAffx.4772.1.S1_at--741--6531Chr06:4401928..4401952 (25 bp)
GATTTACAATTTTCCAAGCTGCTCA
LOC_Os06g08800
OsAffx.4772.1.S1_at--382--2251Chr06:4401965..4401989 (25 bp)
AAATATCATCATGTTCCTGCCACGG
LOC_Os06g08800
OsAffx.4772.1.S1_at--1066--6691Chr06:4401977..4402001 (25 bp)
GTTCCTGCCACGGAATGTGGACTTA
LOC_Os06g08800
OsAffx.4772.1.S1_at--614--5951Chr06:4402011..4402035 (25 bp)
GAGCAACTTTCTTGGTTGTCTTCTC
LOC_Os06g08800
OsAffx.4772.1.S1_at--130--6551Chr06:4402175..4402199 (25 bp)
GATTCAAAGGGATAACCGCCTACTT
LOC_Os06g08800
Target Sequence 
ATCCAGGGTTGCTACGTGGTCGCCGTGGAGATCGACCCCCGGAAGGTGGAGCTCGCGGCGCACAACGCCAGGATCTACGG
CGTCGACGACATGATCGAGTTCGTCGTCGCCGATTTCTTCCACCTCGCGCCCTCCTTGAAGGCAGATTTGGTGTTCCTTT
CACCGCCATGGGGAGGGCCATCCTACAGCCAAGCTCAAGTTTACTCCCTTGATATGCTGAAGCCAAGAGATGGATTTACA
ATTTTCCAAGCTGCTCAGGAAATATCTCCAAATATCATCATGTTCCTGCCACGGAATGTGGACTTAAGCCAAGTAGAGCA
ACTTTCTTGGTTGTCTTCTCCCCCCTTGGATTTTGTGAGCGAAGAGAATTACATAGAACATAGATTCAAAGGGATAACCG
CCTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis