Browse Element(s) Details


Os.273.1.S1_at

Description gb:AB037135.2
DB_XREF= gi:20269232
GEN=OsORC1
TID=Os.273.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.273 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsORC1 mRNA for origin recognition complex 1, complete cds.
PROD=origin recognition complex 1
FL= gb:AB037135.2 gb:AK105033.1 gb:AK103068.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0879011/11origin recognition complex subunit 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08730OsAffx.15316.1.S1_at11/116+4361881..4369595expressed protein
LOC_Os06g08740Os.15186.1.S1_at11/116+4369967..4375384expressed protein
LOC_Os06g08750Os.14290.1.S1_at11/116+4378814..4382419integral membrane transporter family protein, putative, expressed
LOC_Os06g08760OsAffx.27516.1.S1_at11/116+4383884..4384111hypothetical protein
LOC_Os06g08770Os.54465.1.S1_at11/116+4387234..4390752RuvB-like 2, putative, expressed
LOC_Os06g08780OsAffx.15317.1.S1_at11/116+4391767..4392090hypothetical protein
LOC_Os06g08790Os.273.1.S1_at11/116+4392377..4400130origin recognition complex subunit 1, putative, expressed
LOC_Os06g08800OsAffx.4772.1.S1_at11/116+4400652..4402236lmbW protein, putative
LOC_Os06g08810Os.54870.1.S1_at10/116+4403147..4405035NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g08820OsAffx.15318.1.S1_at11/116+4409057..4410391Zinc finger, C3HC4 type family protein
LOC_Os06g08830OsAffx.15319.1.S1_at10/116+4417695..4419368UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0006260biological_processDNA replication
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.273.1.S1_at--1019--5391Chr06:4399227..4399250 (24 bp)
GAAGCTTCAGCTTAACTATCCAAGT
LOC_Os06g08790
Os.273.1.S1_at--608--10391Chr06:4399644..4399668 (25 bp)
TTTTGCCCTGAAGGAATCCCCAGAT
LOC_Os06g08790
Os.273.1.S1_at--440--551Chr06:4399659..4399683 (25 bp)
ATCCCCAGATATTCCATGGTTGTCC
LOC_Os06g08790
Os.273.1.S1_at--762--6631Chr06:4399713..4399737 (25 bp)
GTTGTACTTTCCCAGCATTTCATTC
LOC_Os06g08790
Os.273.1.S1_at--433--191Chr06:4399729..4399753 (25 bp)
ATTTCATTCATCTACTCCTGGAGTT
LOC_Os06g08790
Os.273.1.S1_at--245--8051Chr06:4399754..4399778 (25 bp)
GGAGAGCAACGATCGCAACTACTTG
LOC_Os06g08790
Os.273.1.S1_at--156--3271Chr06:4399769..4399791 (23 bp)
CAACTACTTGCCCTTGATCAGCAAA
LOC_Os06g08790
Os.273.1.S1_at--571--7491Chr06:4399943..4399967 (25 bp)
GTGGGTCCAATTGTTCATCTTCCAA
LOC_Os06g08790
Os.273.1.S1_at--1132--231Chr06:4399971..4399995 (25 bp)
ATATCGACTCGAAGGATGCCGCTGC
LOC_Os06g08790
Os.273.1.S1_at--47--3011Chr06:4400007..4400031 (25 bp)
AATGCAGTGTCGCACCAGGACTGTA
LOC_Os06g08790
Os.273.1.S1_at--837--1031Chr06:4400059..4400083 (25 bp)
AGGTCGCCATTTTATTTTCGCCAAT
LOC_Os06g08790
Target Sequence 
GAAGCTTCAGCTTAACTATCCAAGTGACGATGTAACTTTTGCCCTGAAGGAATCCCCAGATATTCCATGGTTGTCCAAGT
ACCTGTGAAGTTTACACTTGCAGCGGTTGTACTTTCCCAGCATTTCATTCATCTACTCCTGGAGTTGGAGAGCAACGATC
GCAACTACTTGCCCTTGATCAGCAAATCTCGGAATTTATGTGGGTCCAATTGTTCATCTTCCAAAAGATATCGACTCGAA
GGATGCCGCTGCAACAAAATGTAAATGCAGTGTCGCACCAGGACTGTAACATATGTATGATTCGAAGGAGATTGTAGGTC
GCCATTTTATTTTCGCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis