Browse Element(s) Details


OsAffx.27516.1.S1_at

Description tigr:9634.m00822
TID=OsAffx.27516.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0876011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08730OsAffx.15316.1.S1_at11/116+4361881..4369595expressed protein
LOC_Os06g08740Os.15186.1.S1_at11/116+4369967..4375384expressed protein
LOC_Os06g08750Os.14290.1.S1_at11/116+4378814..4382419integral membrane transporter family protein, putative, expressed
LOC_Os06g08760OsAffx.27516.1.S1_at11/116+4383884..4384111hypothetical protein
LOC_Os06g08770Os.54465.1.S1_at11/116+4387234..4390752RuvB-like 2, putative, expressed
LOC_Os06g08780OsAffx.15317.1.S1_at11/116+4391767..4392090hypothetical protein
LOC_Os06g08790Os.273.1.S1_at11/116+4392377..4400130origin recognition complex subunit 1, putative, expressed
LOC_Os06g08800OsAffx.4772.1.S1_at11/116+4400652..4402236lmbW protein, putative
LOC_Os06g08810Os.54870.1.S1_at10/116+4403147..4405035NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g08820OsAffx.15318.1.S1_at11/116+4409057..4410391Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27516.1.S1_at--1000--7671Chr06:4384008..4384032 (25 bp)
GGGTTCGGGCTGTCGAGCAGCGTGC
LOC_Os06g08760
OsAffx.27516.1.S1_at--386--9091Chr06:4383976..4384000 (25 bp)
TGCTACAGCGAGAGCATGGCCATCT
LOC_Os06g08760
OsAffx.27516.1.S1_at--1039--9851Chr06:4383973..4383997 (25 bp)
TACAGCGAGAGCATGGCCATCTTCG
LOC_Os06g08760
OsAffx.27516.1.S1_at--1--2171Chr06:4383972..4383996 (25 bp)
ACAGCGAGAGCATGGCCATCTTCGA
LOC_Os06g08760
OsAffx.27516.1.S1_at--852--4071Chr06:4383968..4383992 (25 bp)
CGAGAGCATGGCCATCTTCGACGAC
LOC_Os06g08760
OsAffx.27516.1.S1_at--943--3931Chr06:4383935..4383959 (25 bp)
CGGCTTCACGGAGATGCTGCTCCTA
LOC_Os06g08760
OsAffx.27516.1.S1_at--1110--10511Chr06:4383931..4383955 (25 bp)
TTCACGGAGATGCTGCTCCTACTTG
LOC_Os06g08760
OsAffx.27516.1.S1_at--396--1931Chr06:4383928..4383952 (25 bp)
ACGGAGATGCTGCTCCTACTTGGCG
LOC_Os06g08760
OsAffx.27516.1.S1_at--213--631Chr06:4383922..4383946 (25 bp)
ATGCTGCTCCTACTTGGCGAAGCTG
LOC_Os06g08760
OsAffx.27516.1.S1_at--299--4771Chr06:4383920..4383944 (25 bp)
GCTGCTCCTACTTGGCGAAGCTGAG
LOC_Os06g08760
OsAffx.27516.1.S1_at--1079--3831Chr06:4383919..4383943 (25 bp)
CTGCTCCTACTTGGCGAAGCTGAGC
LOC_Os06g08760
Target Sequence 
GGGTTCGGGCTGTCGAGCAGCGTGCTCGCTGCTGCTACAGCGAGAGCATGGCCATCTTCGACGACGATGGCGACGGCTTC
ACGGAGATGCTGCTCCTACTTGGCGAAGCTGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis