Browse Element(s) Details


Os.54485.1.S1_at

Description gb:AK105309.1
DB_XREF= gi:32990518
TID=Os.54485.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54485 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-C01, full insert sequence.
FL= gb:AK105309.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g507702/11C4-dicarboxylate transporter/malic acid transport family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50750Os.7939.1.S1_at11/115+29010289..29015582AAA-type ATPase family protein, putative, expressed
LOC_Os05g50750Os.32943.2.S1_x_at1/115+29010289..29015582AAA-type ATPase family protein, putative, expressed
LOC_Os05g50760NANA5+29023326..29023754hypothetical protein
LOC_Os05g50770Os.54485.1.S1_at2/115+29036431..29038295C4-dicarboxylate transporter/malic acid transport family protein, putative
LOC_Os05g50770Os.5608.3.S1_x_at1/115+29036431..29038295C4-dicarboxylate transporter/malic acid transport family protein, putative
LOC_Os05g50780OsAffx.15186.1.S1_at11/115+29046079..29048554Leucine Rich Repeat family protein
LOC_Os05g50790OsAffx.27396.1.S1_at11/115+29048775..29051796hypothetical protein
LOC_Os05g50800Os.15417.1.S1_at9/115+29054191..29056893expressed protein
LOC_Os05g50810Os.12678.1.S1_at11/115+29057230..29061250Calcium-dependent protein kinase, isoform 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54485.1.S1_at--880--9491Chr05:29038186..29038210 (25 bp)
TCTCCTCCAAGAACGGCGCTGACGA
LOC_Os05g50770
Os.54485.1.S1_at--699--1491Chr05:29038233..29038257 (25 bp)
AGCAACTGCAGCTCCGGCGATCAGT
LOC_Os05g50770
Os.54485.1.S1_at--827--7631Chr05:29038280..29038304 (25 bp)
TGGGCGTGGGCGTTAACTAATTTAG
NONE
Os.54485.1.S1_at--306--9751Chr05:29038297..29038321 (25 bp)
TAATTTAGTACGCTGTCGCGTGCGC
NONE
Os.54485.1.S1_at--953--4551Chr05:29038322..29038346 (25 bp)
GCGCGCGTGTACAGACTTGATAATT
NONE
Os.54485.1.S1_at--199--10371Chr05:29038358..29038382 (25 bp)
TTTTTTCTTTTCGATCCTTGCACAA
NONE
Os.54485.1.S1_at--424--6372Chr05:29038370..29038394 (25 bp)
GATCCTTGCACAATCGATTCGCTAC
NONE
Os.54485.1.S1_at--1095--6571Chr05:29038385..29038409 (25 bp)
GATTCGCTACGAATGGACGGCATTG
NONE
Os.54485.1.S1_at--1049--7671Chr05:29038429..29038453 (25 bp)
GGGTTTATCCTTTGAGCGAATTGCA
NONE
Os.54485.1.S1_at--549--4891Chr05:29038469..29038493 (25 bp)
GCTTCAGTTTTGTAGGTTAGTTCCA
NONE
Os.54485.1.S1_at--1084--9791Chr05:29038563..29038587 (25 bp)
TAACGTGTAACTGCATTTGGATTTG
NONE
Target Sequence 
TCTCCTCCAAGAACGGCGCTGACGACTCTGCCTCCGTCTCCAAGGCAAGCAACTGCAGCTCCGGCGATCAGTCCCCGGTG
CCACACGCCGGAGCTGGGCGTGGGCGTTAACTAATTTAGTACGCTGTCGCGTGCGCGCGCGCGTGTACAGACTTGATAAT
TAATTTCTCTTTTTTTTTCTTTTCGATCCTTGCACAATCGATTCGCTACGAATGGACGGCATTGGCGGATCGGCAGCGAC
CAGGGGTTTATCCTTTGAGCGAATTGCAATAAGGATATTATAAGCTTCAGTTTTGTAGGTTAGTTCCAGTTTATAATTAT
TGACTCGGGAGTTTTTTTAATTTATTCCATCGGATATGTGTTTTTAAAGAGGAGATATAACGTGTAACTGCATTTGGATT
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis