Browse Element(s) Details


Os.12128.1.S1_at

Description gb:AK062575.1
DB_XREF= gi:32972593
TID=Os.12128.1
CNT=46
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12128 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C04, full insert sequence.
FL= gb:AK062575.1 gb:AK098854.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5084011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50790OsAffx.27396.1.S1_at11/115+29048775..29051796hypothetical protein
LOC_Os05g50800Os.15417.1.S1_at9/115+29054191..29056893expressed protein
LOC_Os05g50810Os.12678.1.S1_at11/115+29057230..29061250Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g50820Os.8034.1.S1_at11/115+29066820..29068992expressed protein
LOC_Os05g50830Os.54914.1.S1_at11/115+29071353..29073616Protein kinase domain containing protein, expressed
LOC_Os05g50830OsAffx.27515.1.S1_x_at1/115+29071353..29073616Protein kinase domain containing protein, expressed
LOC_Os05g50840Os.12128.1.S1_at11/115+29073640..29078396Mitochondrial carrier protein, expressed
LOC_Os05g50850NANA5+29080826..29081838hypothetical protein
LOC_Os05g50860NANA5+29092050..29093882transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50870NANA5+29094006..29095380transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50880Os.47463.1.S1_x_at6/115+29096769..29101393transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50880Os.14491.2.S1_x_at4/115+29096769..29101393transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12128.1.S1_at--1080--7691Chr05:29074264..29074288 (25 bp)
GGGTCTTGTGCCCAATTCAGTGAAG
LOC_Os05g50840
Os.12128.1.S1_at--507--7311Chr05:29074041..29074065 (25 bp)
GTGCTGGTCATTATCAACTGCTATT
LOC_Os05g50840
Os.12128.1.S1_at--74--7971Chr05:29073971..29073995 (25 bp)
GGATCATAGCACTGAGGCTCCCATT
LOC_Os05g50840
Os.12128.1.S1_at--562--9511Chr05:29073933..29073957 (25 bp)
TCTCAGCCCATGTTGGTATATCCTA
LOC_Os05g50840
Os.12128.1.S1_at--266--7871Chr05:29073919..29073943 (25 bp)
GGTATATCCTACTACTGTTTCCAGA
LOC_Os05g50840
Os.12128.1.S1_at--191--1971Chr05:29073906..29073930 (25 bp)
ACTGTTTCCAGATCCTAATTGTTGC
LOC_Os05g50840
Os.12128.1.S1_at--1092--9731Chr05:29073891..29073915 (25 bp)
TAATTGTTGCTGGACCCGTGGGAAA
LOC_Os05g50840
Os.12128.1.S1_at--457--5391Chr05:29073841..29073865 (25 bp)
GAAGCATTTGCCTAACTCATAAAGT
LOC_Os05g50840
Os.12128.1.S1_at--460--3451Chr05:29073776..29073800 (25 bp)
CAGTATGCTGTGTGCTGCTAATAGT
LOC_Os05g50840
Os.12128.1.S1_at--765--4411Chr05:29073673..29073697 (25 bp)
GCGTTTTATACCAGCATTTCCTTTT
LOC_Os05g50840
Os.12128.1.S1_at--778--10291Chr05:29073657..29073681 (25 bp)
TTTCCTTTTCCCATTCCTGAAGTAT
LOC_Os05g50840
Target Sequence 
GGGTCTTGTGCCCAATTCAGTGAAGGTGGTGCCTTCTATCGCTATTGCATTCGTGACATACGAGTTTGTGCAAAAAGTTC
TAGGAGTAGAGATGAGGATATCAGACTGAAGAAATTGGAGTTAGTGCTGGTCATTATCAACTGCTATTTTTGTAGGGTGG
TGAGTTCTGTTTTTGTAGGAAGGGCAGGTAGAANGGATCATAGCACTGAGGCTCCCATTCAGCATAAGGCCCTCTCAGCC
CATGTTGGTATATCCTACTACTGTTTCCAGATCCTAATTGTTGCTGGACCCGTGGGAAAAATTAATAAGTTGGCTGTAAA
GCATGAAGCATTTGCCTAACTCATAAAGTCTATTCAGTCGTGATGGTGTATTGAGATTGAAAACTCATGCAGTATGCTGT
GTGCTGCTAATAGTTGATTTTCATCATTTTCTTCTCTTTGTCTAAGATTGTTTCTGCTGATAAATACTCTACTTAAACCG
AGTAATGTTGGTGCGTTTTATACCAGCATTTCCTTTTCCCATTCCTGAAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis