Browse Element(s) Details


Os.27470.2.S1_a_at

Description gb:CB631701
DB_XREF= gi:29626690
DB_XREF=OSIIEb09G09.f
CLONE=OSIIEb09G09
TID=Os.27470.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27470 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173580.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3490011/11wound-responsive family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34870OsAffx.27750.1.S1_at11/115+20626635..20630073hypothetical protein
LOC_Os05g34870OsAffx.27750.1.S1_x_at11/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.36607.2.S1_x_at4/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.36607.2.S1_at3/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.46853.2.S1_x_at1/115+20626635..20630073hypothetical protein
LOC_Os05g34880Os.49843.1.S1_at10/115+20638308..20642853Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g34890OsAffx.27168.1.S1_at11/115+20643325..20644127hypothetical protein
LOC_Os05g34900Os.27470.1.S1_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34900Os.27470.3.A1_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34900Os.27470.2.S1_a_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34910Os.54914.1.S1_at1/115+20653165..20653807hypothetical protein
LOC_Os05g34920Os.26692.1.S1_at11/115+20665685..20669702expressed protein
LOC_Os05g34930OsAffx.27169.1.S1_at11/115+20671872..20672697hypothetical protein
LOC_Os05g34940Os.2214.1.S1_at11/115+20676260..20679476MADS-box transcription factor 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27470.2.S1_a_at--335--3711Chr05:20649506..20649530 (25 bp)
CTAAAAGAAGCACTCTCCAAACGGG
LOC_Os05g34900
Os.27470.2.S1_a_at--175--9771Chr05:20649469..20649493 (25 bp)
TAATGGTCACAAATCTGGAGCTAAT
LOC_Os05g34900
Os.27470.2.S1_a_at--373--2191Chr05:20649461..20649485 (25 bp)
ACAAATCTGGAGCTAATGGAACATT
LOC_Os05g34900
Os.27470.2.S1_a_at--530--8171Chr05:20649444..20649468 (25 bp)
GGAACATTTGAGTACCCTTATTCAG
LOC_Os05g34900
Os.27470.2.S1_a_at--796--1811Chr05:20649431..20649455 (25 bp)
ACCCTTATTCAGCATACCGAGACAA
LOC_Os05g34900
Os.27470.2.S1_a_at--460--1791Chr05:20649416..20649440 (25 bp)
ACCGAGACAAGGATGCTCCAGGACA
LOC_Os05g34900
Os.27470.2.S1_a_at--1149--9071Chr05:20649403..20649427 (25 bp)
TGCTCCAGGACATCTTGGCCTCCAA
LOC_Os05g34900
Os.27470.2.S1_a_at--1063--9571Chr05:20649391..20649415 (25 bp)
TCTTGGCCTCCAACAGAAAATAACT
LOC_Os05g34900
Os.27470.2.S1_a_at--221--6531Chr05:20649348..20649372 (25 bp)
GATTTGTCAAAGAACATGCACCACA
LOC_Os05g34900
Os.27470.2.S1_a_at--153--3111Chr05:20649317..20649341 (25 bp)
AATATAATGCTGGTCAATTTTCTGG
LOC_Os05g34900
Os.27470.2.S1_a_at--808--4911Chr05:20649285..20649309 (25 bp)
GCTTCCAGTAACATCTATTCAACAG
LOC_Os05g34900
Target Sequence 
CTAAAAGAAGCACTCTCCAAACGGGGAAGAGTACTANTAATGGTCACAAATCTGGAGCTAATGGAACATTTGAGTACCCT
TATTCAGCATACCGAGACAAGGATGCTCCAGGACATCTTGGCCTCCAACAGAAAATAACTTCTAATGGGGCGAACCAAGA
TTTGTCAAAGAACATGCACCACAAAGAGAAATATAATGCTGGTCAATTTTCTGGTTTGCATGCTTCCAGTAACATCTATT
CAACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27470.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis