Browse Element(s) Details


OsAffx.27169.1.S1_at

Description tigr:9633.m03244
TID=OsAffx.27169.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3493011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34900Os.27470.1.S1_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34900Os.27470.3.A1_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34900Os.27470.2.S1_a_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34910Os.54914.1.S1_at1/115+20653165..20653807hypothetical protein
LOC_Os05g34920Os.26692.1.S1_at11/115+20665685..20669702expressed protein
LOC_Os05g34930OsAffx.27169.1.S1_at11/115+20671872..20672697hypothetical protein
LOC_Os05g34940Os.2214.1.S1_at11/115+20676260..20679476MADS-box transcription factor 4, putative, expressed
LOC_Os05g34950Os.20551.1.A1_at11/115+20678718..20680926Protein kinase domain containing protein, expressed
LOC_Os05g34960NANA5+20682980..20686125hypothetical protein
LOC_Os05g34970NANA5+20690333..20691413hypothetical protein
LOC_Os05g34980Os.11846.1.S1_at11/115+20695884..20698097amino acid carrier, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27169.1.S1_at--794--8611Chr05:20672633..20672657 (25 bp)
TGGTGGCTCCAGCTAGACTAAACCC
LOC_Os05g34930
OsAffx.27169.1.S1_at--713--4291Chr05:20672605..20672629 (25 bp)
CCTCTGTGAGGTTTCTAGTTCCTTG
LOC_Os05g34930
OsAffx.27169.1.S1_at--648--10031Chr05:20672115..20672614 (25 bp)
TAGTTCCTTGCAGAGGGCGACGATT
LOC_Os05g34930
OsAffx.27169.1.S1_at--136--5771Chr05:20672097..20672121 (25 bp)
GACGATTATCTACCCCAGGGCAATG
LOC_Os05g34930
OsAffx.27169.1.S1_at--168--1831Chr05:20672059..20672083 (25 bp)
ACGCCTGTCACTTTAGTCGTGTTGA
LOC_Os05g34930
OsAffx.27169.1.S1_at--568--491Chr05:20672009..20672033 (25 bp)
ATGCGGGCCCTGTGTCCAGGTTCAA
LOC_Os05g34930
OsAffx.27169.1.S1_at--186--4331Chr05:20671994..20672018 (25 bp)
CCAGGTTCAACACGGCTAAGGAGAT
LOC_Os05g34930
OsAffx.27169.1.S1_at--147--6271Chr05:20671972..20671996 (25 bp)
GATGTGGTCAGGTTCTACCATACCC
LOC_Os05g34930
OsAffx.27169.1.S1_at--336--3551Chr05:20671947..20671971 (25 bp)
CATCGAGACCCATGCCTTTTATTGG
LOC_Os05g34930
OsAffx.27169.1.S1_at--938--10351Chr05:20671930..20671954 (25 bp)
TTTATTGGGCAATGGCAGGCGGACC
LOC_Os05g34930
OsAffx.27169.1.S1_at--120--8711Chr05:20671902..20671926 (25 bp)
TGTCCAGCTAGGCATGGTGAATCCT
LOC_Os05g34930
Target Sequence 
TGGTGGCTCCAGCTAGACTAAACCCGTGCCTCTGTGAGGTTTCTAGTTCCTTGCAGAGGGCGACGATTATCTACCCCAGG
GCAATGAGTATGGAAGACAACGCCTGTCACTTTAGTCGTGTTGAATCTGACACTAGTGTTGGCAATGGCATGCGGGCCCT
GTGTCCAGGTTCAACACGGCTAAGGAGATGTGGTCAGGTTCTACCATACCCCATCGAGACCCATGCCTTTTATTGGGCAA
TGGCAGGCGGACCCCATGTCCAGCTAGGCATGGTGAATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis