Browse Element(s) Details


Os.11846.1.S1_at

Description gb:AK065891.1
DB_XREF= gi:32975909
TID=Os.11846.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11846 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013044D15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044D15, full insert sequence.
FL= gb:AK065891.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3498011/11amino acid carrier, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34930OsAffx.27169.1.S1_at11/115+20671872..20672697hypothetical protein
LOC_Os05g34940Os.2214.1.S1_at11/115+20676260..20679476MADS-box transcription factor 4, putative, expressed
LOC_Os05g34950Os.20551.1.A1_at11/115+20678718..20680926Protein kinase domain containing protein, expressed
LOC_Os05g34960NANA5+20682980..20686125hypothetical protein
LOC_Os05g34970NANA5+20690333..20691413hypothetical protein
LOC_Os05g34980Os.11846.1.S1_at11/115+20695884..20698097amino acid carrier, putative, expressed
LOC_Os05g34990OsAffx.27170.1.S1_at11/115+20704991..20705565hypothetical protein
LOC_Os05g35000OsAffx.27171.1.S1_at11/115+20707159..20708951hypothetical protein
LOC_Os05g35000OsAffx.17306.1.S1_x_at1/115+20707159..20708951hypothetical protein
LOC_Os05g35010Os.50386.1.S1_at11/115+20709347..20711181Cytochrome P450 family protein, expressed
LOC_Os05g35020OsAffx.27172.1.S1_at11/115+20713010..20713960hypothetical protein
LOC_Os05g35030OsAffx.14966.1.S1_at11/115+20716638..20717135hypothetical protein
LOC_Os05g35030OsAffx.22005.1.S1_x_at1/115+20716638..20717135hypothetical protein
LOC_Os05g35040OsAffx.14967.1.S1_at11/115+20719279..20719603hypothetical protein
LOC_Os05g35050Os.31094.1.S1_at9/115+20720832..20721704Ctr copper transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015800biological_processacidic amino acid transport
GO:0015802biological_processbasic amino acid transport
GO:0015804biological_processneutral amino acid transport
GO:0015810biological_processL-aspartate transport
GO:0015827biological_processL-tryptophan transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015172molecular_functionacidic amino acid transporter activity
GO:0015174molecular_functionbasic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
GO:0015399molecular_functionprimary active transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11846.1.S1_at--668--5831Chr05:20697689..20697713 (25 bp)
GACCTCAAGGTCTACAAGCCGTTCG
LOC_Os05g34980
Os.11846.1.S1_at--368--1751Chr05:20697719..20697743 (25 bp)
ACCTACTAATTCATCGAGCACCTCG
LOC_Os05g34980
Os.11846.1.S1_at--1037--7311Chr05:20697745..20697769 (25 bp)
GTGCATGCACATACCGTACGTTATT
LOC_Os05g34980
Os.11846.1.S1_at--452--9971Chr05:20697756..20697780 (25 bp)
TACCGTACGTTATTACGCGTGGTCG
LOC_Os05g34980
Os.11846.1.S1_at--811--1811Chr05:20697770..20697794 (25 bp)
ACGCGTGGTCGAGATGAAGTACAGA
LOC_Os05g34980
Os.11846.1.S1_at--764--10051Chr05:20697851..20697875 (25 bp)
TAGTTATTATTGTCACACGTGTGGT
LOC_Os05g34980
Os.11846.1.S1_at--823--1331Chr05:20697916..20697940 (25 bp)
AGAGTGTTGTTTATGCTATTGTTGC
LOC_Os05g34980
Os.11846.1.S1_at--706--6671Chr05:20697936..20697960 (25 bp)
GTTGCTTGTATACTGCCTGTATTAA
LOC_Os05g34980
Os.11846.1.S1_at--415--4472Chr05:20697950..20697974 (25 bp)
GCCTGTATTAATTCCAACCGATGCT
LOC_Os05g34980
Os.11846.1.S1_at--92--10411Chr05:20697980..20698004 (25 bp)
TTTTGATTGTTTCTGGTCCGTGTTA
LOC_Os05g34980
Os.11846.1.S1_at--396--9451Chr05:20697991..20698015 (25 bp)
TCTGGTCCGTGTTAATGTTAACCAA
LOC_Os05g34980
Target Sequence 
GACCTCAAGGTCTACAAGCCGTTCGCCACCACCTACTAATTCATCGAGCACCTCGCGTGCATGCACATACCGTACGTTAT
TACGCGTGGTCGAGATGAAGTACAGATGATTGTATCCTAATTAATCAATTAATCAACCAAAATTAATTAACTAATTACTA
TTTAGTTATTATTGTCACACGTGTGGTGAAAAAAAAANGTGAAAAGAGGAATTTGAGACAGGTTGCATAGAGTGTTGTTT
ATGCTATTGTTGCTTGTATACTGCCTGTATTAATTCCAACCGATGCTACTNATTTTGATTGTTTCTGGTCCGTGTTAATG
TTAACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11846.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis