Browse Element(s) Details


OsAffx.14966.1.S1_at

Description tigr:9633.m03253
TID=OsAffx.14966.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3503011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34980Os.11846.1.S1_at11/115+20695884..20698097amino acid carrier, putative, expressed
LOC_Os05g34990OsAffx.27170.1.S1_at11/115+20704991..20705565hypothetical protein
LOC_Os05g35000OsAffx.27171.1.S1_at11/115+20707159..20708951hypothetical protein
LOC_Os05g35000OsAffx.17306.1.S1_x_at1/115+20707159..20708951hypothetical protein
LOC_Os05g35010Os.50386.1.S1_at11/115+20709347..20711181Cytochrome P450 family protein, expressed
LOC_Os05g35020OsAffx.27172.1.S1_at11/115+20713010..20713960hypothetical protein
LOC_Os05g35030OsAffx.14966.1.S1_at11/115+20716638..20717135hypothetical protein
LOC_Os05g35030OsAffx.22005.1.S1_x_at1/115+20716638..20717135hypothetical protein
LOC_Os05g35040OsAffx.14967.1.S1_at11/115+20719279..20719603hypothetical protein
LOC_Os05g35050Os.31094.1.S1_at9/115+20720832..20721704Ctr copper transporter family protein, expressed
LOC_Os05g35060Os.50400.1.S1_at11/115+20723871..20728032Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g35070OsAffx.14968.1.S1_at11/115+20733836..20737594hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14966.1.S1_at--196--10811Chr05:20716692..20716716 (25 bp)
TTGGGCCTGGCCAAAACGGCGTGTC
LOC_Os05g35030
OsAffx.14966.1.S1_at--115--2391Chr05:20716705..20716729 (25 bp)
AAACGGCGTGTCTTGGCCTGGTCCA
LOC_Os05g35030
OsAffx.14966.1.S1_at--1056--8431Chr05:20716747..20716771 (25 bp)
GGCCATCTATAGCTGGCGTGCTCTT
LOC_Os05g35030
OsAffx.14966.1.S1_at--994--7311Chr05:20716764..20716788 (25 bp)
GTGCTCTTCGCCAACCAGGAACGAA
LOC_Os05g35030
OsAffx.14966.1.S1_at--880--8151Chr05:20716781..20716805 (25 bp)
GGAACGAAGGAACCACAACAGCGCA
LOC_Os05g35030
OsAffx.14966.1.S1_at--897--2151Chr05:20716798..20716822 (25 bp)
ACAGCGCACAAACAGTCCAACGATT
LOC_Os05g35030
OsAffx.14966.1.S1_at--358--2491Chr05:20716808..20716988 (25 bp)
AACAGTCCAACGATTGCCAATTGAG
LOC_Os05g35030
OsAffx.14966.1.S1_at--753--8631Chr05:20717010..20717034 (25 bp)
TGGGACGAACGTTCACGGCCTAGAA
LOC_Os05g35030
OsAffx.14966.1.S1_at--824--10511Chr05:20717021..20717045 (25 bp)
TTCACGGCCTAGAACTACCAGGAGC
LOC_Os05g35030
OsAffx.14966.1.S1_at--1134--1711Chr05:20717037..20717061 (25 bp)
ACCAGGAGCAAGACGTGGGTGCCCC
LOC_Os05g35030
OsAffx.14966.1.S1_at--534--2691Chr05:20717067..20717091 (25 bp)
AAGCTGACGAAGAGGATTGCGATTC
LOC_Os05g35030
Target Sequence 
TTGGGCCTGGCCAAAACGGCGTGTCTTGGCCTGGTCCACGGGCCTCGGGCCATATGGCCATCTATAGCTGGCGTGCTCTT
CGCCAACCAGGAACGAAGGAACCACAACAGCGCACAAACAGTCCAACGATTGCCAATTGAGTTAGGGAAGAGGAGGGTTT
CGTGGGACGAACGTTCACGGCCTAGAACTACCAGGAGCAAGACGTGGGTGCCCCCCTTGAAGCTGACGAAGAGGATTGCG
ATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14966.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis