Browse Element(s) Details


OsAffx.27170.1.S1_at

Description tigr:9633.m03249
TID=OsAffx.27170.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3499011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34950Os.20551.1.A1_at11/115+20678718..20680926Protein kinase domain containing protein, expressed
LOC_Os05g34960NANA5+20682980..20686125hypothetical protein
LOC_Os05g34970NANA5+20690333..20691413hypothetical protein
LOC_Os05g34980Os.11846.1.S1_at11/115+20695884..20698097amino acid carrier, putative, expressed
LOC_Os05g34990OsAffx.27170.1.S1_at11/115+20704991..20705565hypothetical protein
LOC_Os05g35000OsAffx.27171.1.S1_at11/115+20707159..20708951hypothetical protein
LOC_Os05g35000OsAffx.17306.1.S1_x_at1/115+20707159..20708951hypothetical protein
LOC_Os05g35010Os.50386.1.S1_at11/115+20709347..20711181Cytochrome P450 family protein, expressed
LOC_Os05g35020OsAffx.27172.1.S1_at11/115+20713010..20713960hypothetical protein
LOC_Os05g35030OsAffx.14966.1.S1_at11/115+20716638..20717135hypothetical protein
LOC_Os05g35030OsAffx.22005.1.S1_x_at1/115+20716638..20717135hypothetical protein
LOC_Os05g35040OsAffx.14967.1.S1_at11/115+20719279..20719603hypothetical protein
LOC_Os05g35050Os.31094.1.S1_at9/115+20720832..20721704Ctr copper transporter family protein, expressed
LOC_Os05g35060Os.50400.1.S1_at11/115+20723871..20728032Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27170.1.S1_at--830--4751Chr05:20705038..20705062 (25 bp)
GCTGCACCTGCAACATGCGGAAGGT
LOC_Os05g34990
OsAffx.27170.1.S1_at--325--8231Chr05:20705066..20705090 (25 bp)
GGCAAGAGAGATTTCAATGTCGGTG
LOC_Os05g34990
OsAffx.27170.1.S1_at--546--6051Chr05:20705073..20705097 (25 bp)
GAGATTTCAATGTCGGTGAACAAAG
LOC_Os05g34990
OsAffx.27170.1.S1_at--230--7351Chr05:20705088..20705112 (25 bp)
GTGAACAAAGGGTTGTAGCCTGCAT
LOC_Os05g34990
OsAffx.27170.1.S1_at--925--2191Chr05:20705092..20705116 (25 bp)
ACAAAGGGTTGTAGCCTGCATGCGG
LOC_Os05g34990
OsAffx.27170.1.S1_at--1157--10751Chr05:20705100..20705124 (25 bp)
TTGTAGCCTGCATGCGGGCATGGTC
LOC_Os05g34990
OsAffx.27170.1.S1_at--178--3531Chr05:20705110..20705134 (25 bp)
CATGCGGGCATGGTCGACTGGCACC
LOC_Os05g34990
OsAffx.27170.1.S1_at--647--51Chr05:20705119..20705143 (25 bp)
ATGGTCGACTGGCACCGGTAGGGCA
LOC_Os05g34990
OsAffx.27170.1.S1_at--1010--1771Chr05:20705132..20705156 (25 bp)
ACCGGTAGGGCAGGGTGCATCCAAT
LOC_Os05g34990
OsAffx.27170.1.S1_at--770--10071Chr05:20705137..20705161 (25 bp)
TAGGGCAGGGTGCATCCAATGCCAA
LOC_Os05g34990
OsAffx.27170.1.S1_at--574--8271Chr05:20705140..20705164 (25 bp)
GGCAGGGTGCATCCAATGCCAAGCA
LOC_Os05g34990
Target Sequence 
GCTGCACCTGCAACATGCGGAAGGTGTGGGCAAGAGAGATTTCAATGTCGGTGAACAAAGGGTTGTAGCCTGCATGCGGG
CATGGTCGACTGGCACCGGTAGGGCAGGGTGCATCCAATGCCAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis