Browse Element(s) Details


Os.20551.1.A1_at

Description gb:AK066000.1
DB_XREF= gi:32976018
TID=Os.20551.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20551 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013049L02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049L02, full insert sequence.
FL= gb:AK066000.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3495011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34910Os.54914.1.S1_at1/115+20653165..20653807hypothetical protein
LOC_Os05g34920Os.26692.1.S1_at11/115+20665685..20669702expressed protein
LOC_Os05g34930OsAffx.27169.1.S1_at11/115+20671872..20672697hypothetical protein
LOC_Os05g34940Os.2214.1.S1_at11/115+20676260..20679476MADS-box transcription factor 4, putative, expressed
LOC_Os05g34950Os.20551.1.A1_at11/115+20678718..20680926Protein kinase domain containing protein, expressed
LOC_Os05g34960NANA5+20682980..20686125hypothetical protein
LOC_Os05g34970NANA5+20690333..20691413hypothetical protein
LOC_Os05g34980Os.11846.1.S1_at11/115+20695884..20698097amino acid carrier, putative, expressed
LOC_Os05g34990OsAffx.27170.1.S1_at11/115+20704991..20705565hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20551.1.A1_at--304--4031Chr05:20679001..20679025 (25 bp)
CGTACGGGCACAGCGCCATGTTCAG
LOC_Os05g34950
Os.20551.1.A1_at--1060--4331Chr05:20678986..20679010 (25 bp)
CCATGTTCAGCGAGGCCGGGAGCAA
LOC_Os05g34950
Os.20551.1.A1_at--67--3391Chr05:20678979..20679003 (25 bp)
CAGCGAGGCCGGGAGCAACTTCAGC
LOC_Os05g34950
Os.20551.1.A1_at--410--5611Chr05:20678924..20678948 (25 bp)
GACAATGGCGACATGCTCAGGTGAT
LOC_Os05g34950
Os.20551.1.A1_at--416--971Chr05:20678897..20678921 (25 bp)
AGGAGGAGGTGATCTTTTTCTTGGC
LOC_Os05g34950
Os.20551.1.A1_at--13--7411Chr05:20678889..20678913 (25 bp)
GTGATCTTTTTCTTGGCGAATTCAA
LOC_Os05g34950
Os.20551.1.A1_at--119--131Chr05:20678870..20678894 (25 bp)
ATTCAAGAATCATACAGCCTACTAG
LOC_Os05g34950
Os.20551.1.A1_at--770--4491Chr05:20678833..20678857 (25 bp)
GCCGATATGGATGTAGTGCTCTTGC
LOC_Os05g34950
Os.20551.1.A1_at--400--1131Chr05:20678819..20678843 (25 bp)
AGTGCTCTTGCAAATTCTGGTCAAT
LOC_Os05g34950
Os.20551.1.A1_at--895--1471Chr05:20678786..20678810 (25 bp)
AGAATCATATGTTTCGTTATCTCTT
LOC_Os05g34950
Os.20551.1.A1_at--741--4031Chr05:20678772..20678796 (25 bp)
CGTTATCTCTTGATTTGCATTGATT
LOC_Os05g34950
Target Sequence 
CGTACGGGCACAGCGCCATGTTCAGCGAGGCCGGGAGCAACTTCAGCGCCTCGCCGGCGTTCAGTGGCCCGTTCATNGAC
AATGGCGACATGCTCAGGTGATGTAGGAGGAGGTGATCTTTTTCTTGGCGAATTCAAGAATCATACAGCCTACTAGATAA
GAACAATAGCCGATATGGATGTAGTGCTCTTGCAAATTCTGGTCAATTGAACTCCAGAATCATATGTTTCGTTATCTCTT
GATTTGCATTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20551.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis