Browse Element(s) Details


Os.2214.1.S1_at

Description gb:AK100233.1
DB_XREF= gi:32985442
TID=Os.2214.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2214 (NCBI UniGene Cluster)
UG_TITLE=MADS box protein (MADS4) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023051B10, full insert sequence.
FL= gb:L37527.1 gb:AK100233.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3494011/11MADS-box transcription factor 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34900Os.27470.1.S1_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34900Os.27470.3.A1_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34900Os.27470.2.S1_a_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34910Os.54914.1.S1_at1/115+20653165..20653807hypothetical protein
LOC_Os05g34920Os.26692.1.S1_at11/115+20665685..20669702expressed protein
LOC_Os05g34930OsAffx.27169.1.S1_at11/115+20671872..20672697hypothetical protein
LOC_Os05g34940Os.2214.1.S1_at11/115+20676260..20679476MADS-box transcription factor 4, putative, expressed
LOC_Os05g34950Os.20551.1.A1_at11/115+20678718..20680926Protein kinase domain containing protein, expressed
LOC_Os05g34960NANA5+20682980..20686125hypothetical protein
LOC_Os05g34970NANA5+20690333..20691413hypothetical protein
LOC_Os05g34980Os.11846.1.S1_at11/115+20695884..20698097amino acid carrier, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008360biological_processregulation of cell shape
GO:0009908biological_processflower development
GO:0009933biological_processmeristem organization
GO:0010023biological_processproanthocyanidin biosynthesis
GO:0010093biological_processspecification of floral organ identity
GO:0045941biological_processpositive regulation of transcription
GO:0048481biological_processovule development
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2214.1.S1_at--583--5791Chr05:20678266..20678290 (25 bp)
GACGACAGGGACTTCGCGGCCTCGA
LOC_Os05g34940
Os.2214.1.S1_at--474--6331Chr05:20678289..20678313 (25 bp)
GATGCCGTTCACCTTCAGGGTGCAG
LOC_Os05g34940
Os.2214.1.S1_at--267--9211Chr05:20678359..20678383 (25 bp)
TGCCAATTTGGCTGAACCTCCTGCT
LOC_Os05g34940
Os.2214.1.S1_at--467--2631Chr05:20678373..20678397 (25 bp)
AACCTCCTGCTTGCTAGCTTTGCAT
LOC_Os05g34940
Os.2214.1.S1_at--662--10291Chr05:20678397..20678421 (25 bp)
TTTCCTCATGCGCTGCTAGATGTAT
LOC_Os05g34940
Os.2214.1.S1_at--1159--6271Chr05:20678415..20678439 (25 bp)
GATGTATCTGTGGTTTCTCTCATGC
LOC_Os05g34940
Os.2214.1.S1_at--1117--4471Chr05:20678438..20678462 (25 bp)
GCCTGTCTGAATGAACTCACACTGA
LOC_Os05g34940
Os.2214.1.S1_at--604--8731Chr05:20678471..20678495 (25 bp)
TGTCAGTTGTTTTGTGCTCCTCCCA
LOC_Os05g34940
Os.2214.1.S1_at--792--9071Chr05:20678601..20678625 (25 bp)
TGCTTCTCCCTGCTTGTTTAATTAG
LOC_Os05g34940
Os.2214.1.S1_at--366--151Chr05:20678621..20678645 (25 bp)
ATTAGCCACTGTTCTTGTTTCCAGA
LOC_Os05g34940
Os.2214.1.S1_at--634--4331Chr05:20678730..20678754 (25 bp)
CCATCTGTTTCATCGCTTGGAATGA
LOC_Os05g34940
Target Sequence 
GACGACAGGGACTTCGCGGCCTCGATGCCGTTCACCTTCAGGGTGCAGCCCAGCCACCCCAACCTCCAGCAGGAGAAGTA
GGCTGCTGAGCACTGCCAATTTGGCTGAACCTCCTGCTTGCTAGCTTTGCATTTCCTCATGCGCTGCTAGATGTATCTGT
GGTTTCTCTCATGCCTGTCTGAATGAACTCACACTGATGAGAGGGTGTCAGTTGTTTTGTGCTCCTCCCAGCATTAGCAC
TCAGAATTCAGAAATGACTCAATGTCAGTTGCTTTTGTGCTTCTCCCAGCATTAGCACTCAGAATTCAGAAATGACTCAA
TGTCAGTTGCTTTTGTGCTTCTCCCTGCTTGTTTAATTAGCCACTGTTCTTGTTTCCAGATGGTGAACAGTCAGTTTGTA
TTATCTAGTTATCTTGGCAAGGATCAGTAAAATTCACAAGTAGCAGCCAACTCTGATAATAATTCCATCTGTTTCATCGC
TTGGAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis