Browse Element(s) Details


Os.27470.1.S1_at

Description gb:CF197185
DB_XREF= gi:33381842
DB_XREF=Ir64vi1.5_G10
CLONE=IR64-VI1.5G10
TID=Os.27470.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27470 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173580.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3490011/11wound-responsive family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34870OsAffx.27750.1.S1_at11/115+20626635..20630073hypothetical protein
LOC_Os05g34870OsAffx.27750.1.S1_x_at11/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.36607.2.S1_x_at4/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.36607.2.S1_at3/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.46853.2.S1_x_at1/115+20626635..20630073hypothetical protein
LOC_Os05g34880Os.49843.1.S1_at10/115+20638308..20642853Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g34890OsAffx.27168.1.S1_at11/115+20643325..20644127hypothetical protein
LOC_Os05g34900Os.27470.1.S1_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34900Os.27470.3.A1_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34900Os.27470.2.S1_a_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34910Os.54914.1.S1_at1/115+20653165..20653807hypothetical protein
LOC_Os05g34920Os.26692.1.S1_at11/115+20665685..20669702expressed protein
LOC_Os05g34930OsAffx.27169.1.S1_at11/115+20671872..20672697hypothetical protein
LOC_Os05g34940Os.2214.1.S1_at11/115+20676260..20679476MADS-box transcription factor 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27470.1.S1_at--548--5531Chr05:20648988..20649285 (25 bp)
GAAACAATGCACTTGGCCACAAAAA
LOC_Os05g34900
Os.27470.1.S1_at--741--3031Chr05:20648965..20648989 (25 bp)
AATCCATACAGAAGGTTCAGGTACC
LOC_Os05g34900
Os.27470.1.S1_at--267--1071Chr05:20648933..20648957 (25 bp)
AGGGTACCAGACTTGAGCGAGCTAT
LOC_Os05g34900
Os.27470.1.S1_at--244--1411Chr05:20648925..20648949 (25 bp)
AGACTTGAGCGAGCTATCCGTGACC
LOC_Os05g34900
Os.27470.1.S1_at--989--3691Chr05:20648912..20648936 (25 bp)
CTATCCGTGACCTCCAAAACATTGT
LOC_Os05g34900
Os.27470.1.S1_at--22--2371Chr05:20648776..20648800 (25 bp)
AAACCACAGATTCTTGATGTACATG
LOC_Os05g34900
Os.27470.1.S1_at--657--5491Chr05:20648267..20648291 (25 bp)
GAACATGAGCTGATCAATCGCCTCA
LOC_Os05g34900
Os.27470.1.S1_at--1065--1731Chr05:20648227..20648251 (25 bp)
ACCTTGTGCACCGTAGGACACTGAA
LOC_Os05g34900
Os.27470.1.S1_at--406--7771Chr05:20647456..20647480 (25 bp)
GGTGCAATCAGGTTTATGTGCTAAA
LOC_Os05g34900
Os.27470.1.S1_at--237--1471Chr05:20647427..20647451 (25 bp)
AGAAGGCTGGGAAATTGCAACAAGT
LOC_Os05g34900
Os.27470.1.S1_at--590--7091Chr05:20647374..20647394 (21 bp)
GTCTAGCCACCAAACCTAAGGGTGC
LOC_Os05g34900
Target Sequence 
GAAACAATGCACTTGGCCACAAAAATCCATACAGAAGGTTCAGGTACCAAGACCAAGGGTACCAGACTTGAGCGAGCTAT
CCGTGACCTCCAAAACATTGTCACTGAATACAAACCACAGATTCTTGATGTACATGAGGCTGANGCAAATTGCCAGGTAG
CAGTTAAAAGAAGATTGCCACAAGAAGTAAAACAAAAACTTGCTAAGGTCGCAAGGNTATCGGCAAATCAAGGAAAAATA
CCAGAACATGAGCTGATCAATCGCCTCATGGGCATAGTTGGCCACCTTGTGCACCGTAGGACACTGAAGAGAAACATGAA
AGAAATGGTGCAATCAGGTTTATGTGCTAAACAAGAGAAGGCTGGGAAATTGCAACAAGTGAAAATGGAAATCTATGNNN
TGGTCAANNNACGTCTAGCCACCAAACCTAAGGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis