Browse Element(s) Details


Os.49843.1.S1_at

Description gb:AK111886.1
DB_XREF= gi:37988549
TID=Os.49843.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49843 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068K11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068K11, full insert sequence.
FL= gb:AK111886.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3488010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34870OsAffx.27750.1.S1_at11/115+20626635..20630073hypothetical protein
LOC_Os05g34870OsAffx.27750.1.S1_x_at11/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.36607.2.S1_x_at4/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.36607.2.S1_at3/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.46853.2.S1_x_at1/115+20626635..20630073hypothetical protein
LOC_Os05g34880Os.49843.1.S1_at10/115+20638308..20642853Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g34890OsAffx.27168.1.S1_at11/115+20643325..20644127hypothetical protein
LOC_Os05g34900Os.27470.1.S1_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34900Os.27470.3.A1_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34900Os.27470.2.S1_a_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34910Os.54914.1.S1_at1/115+20653165..20653807hypothetical protein
LOC_Os05g34920Os.26692.1.S1_at11/115+20665685..20669702expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49843.1.S1_at--486--6671NONE
GTTGCATCACATGAAAATGGCTGTT
NONE
Os.49843.1.S1_at--1103--1911Chr05:20639364..20639388 (25 bp)
ACGGTGCTATATATGCTGCTAAATT
LOC_Os05g34880
Os.49843.1.S1_at--825--671Chr05:20639337..20639361 (25 bp)
ATGACAAGTGGCTCTATGCTGGTGG
LOC_Os05g34880
Os.49843.1.S1_at--600--6031Chr05:20639131..20639155 (25 bp)
GAGATGTTGCTACCTTTACTTGTGA
LOC_Os05g34880
Os.49843.1.S1_at--1151--2511Chr05:20639097..20639121 (25 bp)
AACTTCAATACTGTACTGGGATGGA
LOC_Os05g34880
Os.49843.1.S1_at--1138--2931Chr05:20639073..20639097 (25 bp)
AAGGCTGATAGTTGGACTTTCTAAC
LOC_Os05g34880
Os.49843.1.S1_at--950--7871Chr05:20638589..20638613 (25 bp)
GGTTTTCTACAAGGCATCTTAACTC
LOC_Os05g34880
Os.49843.1.S1_at--533--3071Chr05:20638549..20638573 (25 bp)
AATCATTTGTCACTCCATCTTGTAT
LOC_Os05g34880
Os.49843.1.S1_at--606--5231Chr05:20638517..20638541 (25 bp)
GAATAGCACACTGTATAGTCGAATT
LOC_Os05g34880
Os.49843.1.S1_at--897--7331Chr05:20638406..20638430 (25 bp)
GTGCAACTGCACAATAGGGTAAGGT
LOC_Os05g34880
Os.49843.1.S1_at--400--5551Chr05:20638357..20638381 (25 bp)
GAAACCATCGAAGTCGTAGCTCATA
LOC_Os05g34880
Target Sequence 
GTTGCATCACATGAAAATGGCTGTTTGAAGATCTGGAAGGATGATGTCCTAGTAAAGTCAGAGANACTTCAAAACGGTGC
TATATATGCTGCTAAATTGAATGACAAGTGGCTCTATGCTGGTGGATGGGATAAAGTTGTAAATATTCAGGAGTTATTGG
AAGATGATTCAGAGGTGGAAATCAGAGATGTTGCTACCTTTACTTGTGATTCAATTATAACTTCAATACTGTACTGGGAT
GGAAGGCTGATAGTTGGACTTTCTAACAGGGAGATTAAGGTTTTCTACAAGGCATCTTAACTCTAAATCAGGATTATTAA
TCATTTGTCACTCCATCTTGTATATATTGTGAATAGCACACTGTATAGTCGAATTGATAACGAAAGACTGATAGGACCAT
GTAATTAGAATNNNAANGCTGCTTTTGGTGAATGATGATAAACCTGTATGGTAAAGTTTGAGTGCAACTGCACAATAGGG
TAAGGTTTTTTGTAACAGTAGTATCATATAGAAACCATCGAAGTCGTAGCTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis