Browse Element(s) Details


Os.50400.1.S1_at

Description gb:AK121054.1
DB_XREF= gi:37990677
TID=Os.50400.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50400 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023055P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055P22, full insert sequence.
FL= gb:AK121054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3506011/11Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34990OsAffx.27170.1.S1_at11/115+20704991..20705565hypothetical protein
LOC_Os05g35000OsAffx.27171.1.S1_at11/115+20707159..20708951hypothetical protein
LOC_Os05g35000OsAffx.17306.1.S1_x_at1/115+20707159..20708951hypothetical protein
LOC_Os05g35010Os.50386.1.S1_at11/115+20709347..20711181Cytochrome P450 family protein, expressed
LOC_Os05g35020OsAffx.27172.1.S1_at11/115+20713010..20713960hypothetical protein
LOC_Os05g35030OsAffx.14966.1.S1_at11/115+20716638..20717135hypothetical protein
LOC_Os05g35030OsAffx.22005.1.S1_x_at1/115+20716638..20717135hypothetical protein
LOC_Os05g35040OsAffx.14967.1.S1_at11/115+20719279..20719603hypothetical protein
LOC_Os05g35050Os.31094.1.S1_at9/115+20720832..20721704Ctr copper transporter family protein, expressed
LOC_Os05g35060Os.50400.1.S1_at11/115+20723871..20728032Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g35070OsAffx.14968.1.S1_at11/115+20733836..20737594hypothetical protein
LOC_Os05g35080NANA5+20745363..20746099hypothetical protein
LOC_Os05g35090OsAffx.16467.1.S1_at9/115+20752160..20754832transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g35090Os.26886.2.S1_s_at7/115+20752160..20754832transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g35090Os.26886.6.S1_s_at7/115+20752160..20754832transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50400.1.S1_at--584--811Chr05:20724427..20724449 (23 bp)
ATGGTCTCCCACCAAATTTACCTAT
LOC_Os05g35060
Os.50400.1.S1_at--1043--9111Chr05:20724339..20724363 (25 bp)
TGCTGATGGCATTCCACTCAGGTCA
LOC_Os05g35060
Os.50400.1.S1_at--272--1011Chr05:20724311..20724335 (25 bp)
AGGGCCACGGAATCGTTTCGTGCGA
LOC_Os05g35060
Os.50400.1.S1_at--816--10611Chr05:20724295..20724319 (25 bp)
TTCGTGCGACATTATAACCTGCTAA
LOC_Os05g35060
Os.50400.1.S1_at--1125--4831Chr05:20724275..20724299 (25 bp)
GCTAATGCTTGCAACCGTGCTTCAA
LOC_Os05g35060
Os.50400.1.S1_at--159--10351Chr05:20724248..20724272 (25 bp)
TTTATACTCCAGCAGCAACGCTAGC
LOC_Os05g35060
Os.50400.1.S1_at--576--3251Chr05:20724233..20724257 (25 bp)
CAACGCTAGCTCCTCAATGTGGGAA
LOC_Os05g35060
Os.50400.1.S1_at--444--6471Chr05:20724183..20724207 (25 bp)
GATACACACTCCATAGGTTGACTGT
LOC_Os05g35060
Os.50400.1.S1_at--1150--6211Chr05:20724047..20724071 (25 bp)
GATGGCCAAGAATCCCAAGTTCTGA
LOC_Os05g35060
Os.50400.1.S1_at--522--1231Chr05:20724030..20724054 (25 bp)
AGTTCTGAACTGTAAATCGCTGTGA
LOC_Os05g35060
Os.50400.1.S1_at--487--531Chr05:20724015..20724039 (25 bp)
ATCGCTGTGAGCCATAGAGGTCATT
LOC_Os05g35060
Target Sequence 
ATGGTCTCCCACCAAATTTACCTATCCGACTACNTAAACACGCCGAGGAGGATGGTTATGCTGCTGAAGNAATNCCTCTC
AGATCTGCTGCTGATGGCATTCCACTCAGGTCACCGAGGGCCACGGAATCGTTTCGTGCGACATTATAACCTGCTAATGC
TTGCAACCGTGCTTCAAGGTTTATACTCCAGCAGCAACGCTAGCTCCTCAATGTGGGAAGGGAAGAATCTCCATTCTTTC
ATTGGATACACACTCCATAGGTTGACTGTAGGATCCAANGGTAACGGCTCGGCCCCCCCTGTAATTTTTTCAGACATCCG
TACAAAATTTTGGGGGTCATTACATCAGTTATTATACATATCTTCGGGTGAGNTAACCAGGATGGCCAAGAATCCCAAGT
TCTGAACTGTAAATCGCTGTGAGCCATAGAGGTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis