Browse Element(s) Details


OsAffx.22005.1.S1_x_at

Description gb:NM_188979.1
DB_XREF= gi:34905041
TID=OsAffx.22005.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0686C03.3 (P0686C03.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g296141/11Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g350301/11hypothetical protein
LOC_Os02g456401/11hypothetical protein
LOC_Os05g355941/11POT family protein, expressed
LOC_Os01g151501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29570OsAffx.25281.1.S1_at9/113+16811515..16817757Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os03g29570Os.52574.2.S1_x_at1/113+16811515..16817757Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os03g29584OsAffx.25282.1.S1_at11/113+16818929..16824042hypothetical protein
LOC_Os03g29584OsAffx.3364.1.S1_at10/113+16818929..16824042hypothetical protein
LOC_Os03g29600OsAffx.10065.1.S1_at4/113+16828734..16831972transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29600Os.53970.1.S1_at1/113+16828734..16831972transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29614Os.56985.1.S1_a_at11/113+16834438..16838634Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g29614OsAffx.22005.1.S1_x_at1/113+16834438..16838634Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g29630OsAffx.25283.1.S1_at11/113+16843870..16847613Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os03g29650NANA3+16858656..16865217retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006857biological_processoligopeptide transport
GO:0009611biological_processresponse to wounding
GO:0009800biological_processcinnamic acid biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009845biological_processseed germination
GO:0009892biological_processnegative regulation of metabolism
GO:0010023biological_processproanthocyanidin biosynthesis
GO:0010026biological_processtrichome differentiation (sensu Magnoliophyta)
GO:0005634cellular_componentnucleus
GO:0016020cellular_componentmembrane
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005215molecular_functiontransporter activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22005.1.S1_x_at--593--3193Chr08:25399242..25399266 (25 bp)
CAATCGGGCCATGCCATGCTTGGGC
NONE
OsAffx.22005.1.S1_x_at--813--3513Chr08:25399251..25399275 (25 bp)
CATGCCATGCTTGGGCCGGACCAAA
NONE
OsAffx.22005.1.S1_x_at--1126--6873Chr09:19146595..19146616 (22 bp)
GGGCCGGACCAAAATGGCGTGCCTT
NONE
OsAffx.22005.1.S1_x_at--488--61345Chr12:20911..20930 (20 bp)
GAGGTCTCGGGCCATATGGCCATCT
NONE
OsAffx.22005.1.S1_x_at--772--4431Chr08:25399317..25399706 (25 bp)
GCCATCTATAGGTTGGTCCGGCGAT
NONE
OsAffx.22005.1.S1_x_at--459--9551Chr08:25399321..25399710 (25 bp)
TCTATAGGTTGGTCCGGCGATTCAA
NONE
OsAffx.22005.1.S1_x_at--1147--6611Chr08:25399693..25399717 (25 bp)
GTTGGTCCGGCGATTCAAGAGAAGT
NONE
OsAffx.22005.1.S1_x_at--142--10511Chr08:25399706..25399730 (25 bp)
TTCAAGAGAAGTAGTCGCGGTGGCT
NONE
OsAffx.22005.1.S1_x_at--477--891Chr08:25399732..25399756 (25 bp)
AGGCCTCTGCAGTCGGCGAGGTATA
NONE
OsAffx.22005.1.S1_x_at--226--7191Chr08:25399743..25399767 (25 bp)
GTCGGCGAGGTATACTTCGCGCAGT
NONE
OsAffx.22005.1.S1_x_at--1011--2051Chr08:25399756..25399780 (25 bp)
ACTTCGCGCAGTGCGGCGAGTGCAA
NONE
Target Sequence 
CAATCGGGCCATGCCATGCTTGGGCCGGACCAAAATGGCGTGCCTTGGGCTGGGCCGGAGGTCTCGGGCCATATGGCCAT
CTATAGGTTGGTCCGGCGATTCAAGAGAAGTAGTCGCGGTGGCTGAGGCCTCTGCAGTCGGCGAGGTATACTTCGCGCAG
TGCGGCGAGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22005.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis