Browse Element(s) Details

OsAffx.3364.1.S1_at

Description

tigr:9631.m02885
TID=OsAffx.3364.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g29584	10/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g29540	Os.17294.1.S1_a_at	11/11	3	+	16791773..16795748	ATP-dependent protease La domain containing protein, expressed
LOC_Os03g29540	OsAffx.26598.2.S1_at	2/11	3	+	16791773..16795748	ATP-dependent protease La domain containing protein, expressed
LOC_Os03g29540	OsAffx.26598.2.S1_x_at	1/11	3	+	16791773..16795748	ATP-dependent protease La domain containing protein, expressed
LOC_Os03g29550	NA	NA	3	+	16796274..16797767	retrotransposon protein, putative, LINE subclass
LOC_Os03g29560	Os.46012.2.S1_x_at	10/11	3	+	16800700..16807802	retrotransposon protein, putative, unclassified
LOC_Os03g29560	Os.46012.3.S1_x_at	7/11	3	+	16800700..16807802	retrotransposon protein, putative, unclassified
LOC_Os03g29560	Os.27088.1.A1_x_at	5/11	3	+	16800700..16807802	retrotransposon protein, putative, unclassified
LOC_Os03g29560	Os.49232.1.S1_x_at	1/11	3	+	16800700..16807802	retrotransposon protein, putative, unclassified
LOC_Os03g29560	Os.54691.1.S1_x_at	1/11	3	+	16800700..16807802	retrotransposon protein, putative, unclassified
LOC_Os03g29570	OsAffx.25281.1.S1_at	9/11	3	+	16811515..16817757	Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os03g29570	Os.52574.2.S1_x_at	1/11	3	+	16811515..16817757	Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os03g29584	OsAffx.25282.1.S1_at	11/11	3	+	16818929..16824042	hypothetical protein
LOC_Os03g29584	OsAffx.3364.1.S1_at	10/11	3	+	16818929..16824042	hypothetical protein
LOC_Os03g29600	OsAffx.10065.1.S1_at	4/11	3	+	16828734..16831972	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29600	Os.53970.1.S1_at	1/11	3	+	16828734..16831972	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29614	Os.56985.1.S1_a_at	11/11	3	+	16834438..16838634	Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g29614	OsAffx.22005.1.S1_x_at	1/11	3	+	16834438..16838634	Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g29630	OsAffx.25283.1.S1_at	11/11	3	+	16843870..16847613	Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.3364.1.S1_at--367--993	1	Chr03:16821168..16821192 (25 bp)	TACGGCGTGTGGTTGTCGTTACATT	LOC_Os03g29584
OsAffx.3364.1.S1_at--565--611	1	Chr03:16821202..16821222 (21 bp)	GAGTGTCTGGTGCAAGTTACGATCA	LOC_Os03g29584
OsAffx.3364.1.S1_at--849--643	1	Chr03:16822204..16822228 (25 bp)	GATCAGTCTGAACAGCTGCTTCCCA	LOC_Os03g29584
OsAffx.3364.1.S1_at--781--571	1	Chr03:16823192..16823216 (25 bp)	GACTCATCTCCAAACTCATCTTAAT	LOC_Os03g29584
OsAffx.3364.1.S1_at--1046--749	1	Chr03:16823218..16823242 (25 bp)	GTGGTGAACAGTGGCACTTCCCTTA	LOC_Os03g29584
OsAffx.3364.1.S1_at--202--1015	1	Chr03:16823241..16823265 (25 bp)	TATCGGTTCCATGACAATCGTGCTG	LOC_Os03g29584
OsAffx.3364.1.S1_at--356--305	1	Chr03:16823256..16823280 (25 bp)	AATCGTGCTGAGTTCTGGCACCATG	LOC_Os03g29584
OsAffx.3364.1.S1_at--484--67	1	Chr03:16823286..16823310 (25 bp)	ATGAACTCTCTTCAGTGGCTCCTGT	LOC_Os03g29584
OsAffx.3364.1.S1_at--475--387	1	Chr03:16823313..16823337 (25 bp)	CTGTTGTTGCGATTGGTGCCATTCT	LOC_Os03g29584
OsAffx.3364.1.S1_at--521--811	1	NONE	GGACGCAGTGCATACCAAGAATTTC	NONE
OsAffx.3364.1.S1_at--545--853	1	Chr03:16823960..16823984 (25 bp)	TGGAGGGAACTCTTTTGCAGTACGG	LOC_Os03g29584

Target Sequence

TACGGCGTGTGGTTGTCGTTACATTTATTTTATGGAGTGTCTGGTGCAAGTTACGATCAGTCTGAACAGCTGCTTCCCAT
ACGCAAACTGTTGCGATGTGCTTATGGTCGAGGCGGTTGTGAACCAAATCAGCACATCAACCTCGGCCTTGACACATTCA
GTCGTTCAGAGATCAATCAACGGAAGCAGTGGCAGATGGCACTGGGCGTGCAATGGCAGGTGTGCACGAATAAGATCATG
TGCTATGACTATGCAAATTCATGCCATATGACTCATCTCCAAACTCATCTTAATGGTGGTGAACAGTGGCACTTCCCTTA
TCGGTTCCATGACAATCGTGCTGAGTTCTGGCACCATGTCACCATGAACTCTCTTCAGTGGCTCCTGTGGCTGTTGTTGC
GATTGGTGCCATTCTTGTGCCCGGACGCAGTGCATACCAAGAATTTCATGGAGGGAACTCTTTTGCAGTACGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis