Browse Element(s) Details


Os.17294.1.S1_a_at

Description gb:AK105845.1
DB_XREF= gi:32991054
TID=Os.17294.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17294 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-G03, full insert sequence.
FL= gb:AK105845.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2954011/11ATP-dependent protease La domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29490OsAffx.13109.1.S1_at11/113+16765676..16767075hypothetical protein
LOC_Os03g29510NANA3+16771325..16772964retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29520NANA3+16775884..16784121retrotransposon protein, putative, unclassified
LOC_Os03g29540Os.17294.1.S1_a_at11/113+16791773..16795748ATP-dependent protease La domain containing protein, expressed
LOC_Os03g29540OsAffx.26598.2.S1_at2/113+16791773..16795748ATP-dependent protease La domain containing protein, expressed
LOC_Os03g29540OsAffx.26598.2.S1_x_at1/113+16791773..16795748ATP-dependent protease La domain containing protein, expressed
LOC_Os03g29550NANA3+16796274..16797767retrotransposon protein, putative, LINE subclass
LOC_Os03g29560Os.46012.2.S1_x_at10/113+16800700..16807802retrotransposon protein, putative, unclassified
LOC_Os03g29560Os.46012.3.S1_x_at7/113+16800700..16807802retrotransposon protein, putative, unclassified
LOC_Os03g29560Os.27088.1.A1_x_at5/113+16800700..16807802retrotransposon protein, putative, unclassified
LOC_Os03g29560Os.49232.1.S1_x_at1/113+16800700..16807802retrotransposon protein, putative, unclassified
LOC_Os03g29560Os.54691.1.S1_x_at1/113+16800700..16807802retrotransposon protein, putative, unclassified
LOC_Os03g29570OsAffx.25281.1.S1_at9/113+16811515..16817757Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os03g29570Os.52574.2.S1_x_at1/113+16811515..16817757Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os03g29584OsAffx.25282.1.S1_at11/113+16818929..16824042hypothetical protein
LOC_Os03g29584OsAffx.3364.1.S1_at10/113+16818929..16824042hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17294.1.S1_a_at--860--8451Chr03:16792060..16792084 (25 bp)
TGGCCACCTCTACTGCAACGACAAG
LOC_Os03g29540
Os.17294.1.S1_a_at--427--9011Chr03:16792047..16792071 (25 bp)
TGCAACGACAAGTAGAGACGACGAC
LOC_Os03g29540
Os.17294.1.S1_a_at--1028--1851Chr03:16792030..16792054 (25 bp)
ACGACGACGATCGAGTGAGTACTCC
LOC_Os03g29540
Os.17294.1.S1_a_at--716--8871Chr03:16792015..16792039 (25 bp)
TGAGTACTCCGTTAATAACCGGCCA
LOC_Os03g29540
Os.17294.1.S1_a_at--65--3071Chr03:16792002..16792026 (25 bp)
AATAACCGGCCACTGGTGAGGACTC
LOC_Os03g29540
Os.17294.1.S1_a_at--608--7371Chr03:16791987..16792011 (25 bp)
GTGAGGACTCCCATGGCCATAGGTT
LOC_Os03g29540
Os.17294.1.S1_a_at--712--4171Chr03:16791978..16792002 (25 bp)
CCCATGGCCATAGGTTTCTTTGGTT
LOC_Os03g29540
Os.17294.1.S1_a_at--319--10551Chr03:16791963..16791987 (25 bp)
TTCTTTGGTTTTGTTTGGCTTCTCT
LOC_Os03g29540
Os.17294.1.S1_a_at--581--8771Chr03:16791952..16791976 (25 bp)
TGTTTGGCTTCTCTGCTTCAGAATT
LOC_Os03g29540
Os.17294.1.S1_a_at--534--10211Chr03:16791903..16791927 (25 bp)
TATTTTTGTAAGTTCCTCGAGCTGT
LOC_Os03g29540
Os.17294.1.S1_a_at--1127--8731Chr03:16791897..16791921 (25 bp)
TGTAAGTTCCTCGAGCTGTTTTTTG
LOC_Os03g29540
Target Sequence 
TGGCCACCTCTACTGCAACGACAAGTAGAGACGACGACGATCGAGTGAGTACTCCGTTAATAACCGGCCACTGGTGAGGA
CTCCCATGGCCATAGGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCAGAATTCAGAGTTCAGAGTTCTAATGTAAATAT
TTTTGTAAGTTCCTCGAGCTGTTTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17294.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis