Browse Element(s) Details


OsAffx.13109.1.S1_at

Description tigr:9631.m02875
TID=OsAffx.13109.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2949011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29460OsAffx.3363.1.S1_at11/113+16742191..1674290460S ribosomal protein L27a-3, putative, expressed
LOC_Os03g29470Os.6140.1.S1_s_at11/113+16749243..16754470Transcription initiation factor IID, 31kD subunit family protein, expressed
LOC_Os03g29480OsAffx.29552.2.S1_at11/113+16759292..16760863GRAS family transcription factor containing protein, expressed
LOC_Os03g29490OsAffx.13109.1.S1_at11/113+16765676..16767075hypothetical protein
LOC_Os03g29510NANA3+16771325..16772964retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29520NANA3+16775884..16784121retrotransposon protein, putative, unclassified
LOC_Os03g29540Os.17294.1.S1_a_at11/113+16791773..16795748ATP-dependent protease La domain containing protein, expressed
LOC_Os03g29540OsAffx.26598.2.S1_at2/113+16791773..16795748ATP-dependent protease La domain containing protein, expressed
LOC_Os03g29540OsAffx.26598.2.S1_x_at1/113+16791773..16795748ATP-dependent protease La domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13109.1.S1_at--294--10131Chr03:16765728..16765752 (25 bp)
TATGCAAGCTTGTACTGATGGGAAT
LOC_Os03g29490
OsAffx.13109.1.S1_at--707--6511Chr03:16765843..16765867 (25 bp)
GATTTCTTGGAACAATTCAACATGG
LOC_Os03g29490
OsAffx.13109.1.S1_at--34--1551Chr03:16765880..16765904 (25 bp)
AGCATCAACTTGTGGGTTGCATCAA
LOC_Os03g29490
OsAffx.13109.1.S1_at--902--2591Chr03:16765903..16765924 (22 bp)
AACGAAGTACGGAAGCTTGCAGCTG
LOC_Os03g29490
OsAffx.13109.1.S1_at--334--5071Chr03:16766290..16766314 (25 bp)
GCAGCTGCCGATGATGCAAGGACAG
LOC_Os03g29490
OsAffx.13109.1.S1_at--571--2491Chr03:16766322..16766346 (25 bp)
AACAGATGTCATTTTCGGCAAGGCA
LOC_Os03g29490
OsAffx.13109.1.S1_at--879--2931Chr03:16766341..16766365 (25 bp)
AAGGCATCTAATCCACCGTGTCATT
LOC_Os03g29490
OsAffx.13109.1.S1_at--366--7451Chr03:16766358..16766378 (21 bp)
GTGTCATTGTCCTAAGCAAGGCAAG
LOC_Os03g29490
OsAffx.13109.1.S1_at--598--8231Chr03:16766946..16766970 (25 bp)
GGCAAGCAAACAAGCACCATATGGT
LOC_Os03g29490
OsAffx.13109.1.S1_at--1068--1711Chr03:16766961..16766985 (25 bp)
ACCATATGGTGGTCACGCAAAAATT
LOC_Os03g29490
OsAffx.13109.1.S1_at--469--5971Chr03:16767005..16767029 (25 bp)
GAGAAGCTCGAAAGATGGCAACATC
LOC_Os03g29490
Target Sequence 
TATGCAAGCTTGTACTGATGGGAATGGAACAAAAAGATATGATTTCTTGGAACAATTCAACATGGGGGATAAGGAGTAGC
ATCAACTTGTGGGTTGCATCAACGAAGTACGGAAGCTTGCAGCTGCCGATGATGCAAGGACAGAAACATCAACAGATGTC
ATTTTCGGCAAGGCATCTAATCCACCGTGTCATTGTCCTAAGCAAGGCAAGCAAACAAGCACCATATGGTGGTCACGCAA
AAATTAAACCTACACCCATCCAGCGAGAAGCTCGAAAGATGGCAACATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis