Browse Element(s) Details


Os.6140.1.S1_s_at

Description gb:CF314141
DB_XREF= gi:33685902
DB_XREF=HD--02-I23.b1
CLONE=HD--02-I23
TID=Os.6140.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.6140 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_175816.1 (A.thaliana) transcriptional activation factor TAFII32, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2947011/11Transcription initiation factor IID, 31kD subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29430Os.24648.1.A1_at1/113+16726136..16730428retrotransposon, putative, centromere-specific
LOC_Os03g29440NANA3+16733964..16736672retrotransposon protein, putative, unclassified
LOC_Os03g29460OsAffx.3363.1.S1_at11/113+16742191..1674290460S ribosomal protein L27a-3, putative, expressed
LOC_Os03g29470Os.6140.1.S1_s_at11/113+16749243..16754470Transcription initiation factor IID, 31kD subunit family protein, expressed
LOC_Os03g29480OsAffx.29552.2.S1_at11/113+16759292..16760863GRAS family transcription factor containing protein, expressed
LOC_Os03g29490OsAffx.13109.1.S1_at11/113+16765676..16767075hypothetical protein
LOC_Os03g29510NANA3+16771325..16772964retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29520NANA3+16775884..16784121retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006352biological_processtranscription initiation
GO:0005669cellular_componenttranscription factor TFIID complex
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6140.1.S1_s_at--154--7111Chr03:16753879..16753903 (25 bp)
GTCAGAGGGTTTCTTTCCAGCTCAA
LOC_Os03g29470
Os.6140.1.S1_s_at--462--2371Chr03:16753920..16753944 (25 bp)
AAACGCCGAGGGACCATGGATCAGT
LOC_Os03g29470
Os.6140.1.S1_s_at--876--771Chr03:16753950..16753974 (25 bp)
ATGGGCTAACTGTTGGTCGTTGGCT
LOC_Os03g29470
Os.6140.1.S1_s_at--459--7871Chr03:16753975..16753999 (25 bp)
GGTTTCTCGCTTCCATCTTGCAAAT
LOC_Os03g29470
Os.6140.1.S1_s_at--252--9891Chr03:16754004..16754028 (25 bp)
TACATTGTCGTGTTGCATTGCCCAA
LOC_Os03g29470
Os.6140.1.S1_s_at--29--8011Chr03:16754042..16754066 (25 bp)
GGATGGTGCTGTTACTCTTAGTTTG
LOC_Os03g29470
Os.6140.1.S1_s_at--460--2871Chr03:16754149..16754173 (25 bp)
AAGTGTGCATGCTGTTCTTCTTCGC
LOC_Os03g29470
Os.6140.1.S1_s_at--388--9571Chr03:16754164..16754188 (25 bp)
TCTTCTTCGCTGGTTAATTCCTTAC
LOC_Os03g29470
Os.6140.1.S1_s_at--629--3151Chr03:16754179..16754203 (25 bp)
AATTCCTTACCGTCAGCAGAGTTTA
LOC_Os03g29470
Os.6140.1.S1_s_at--541--6031Chr03:16754239..16754263 (25 bp)
GAGATGTGGTTTCTTCGTCTTGCAC
LOC_Os03g29470
Os.6140.1.S1_s_at--304--9411Chr03:16754253..16754277 (25 bp)
TCGTCTTGCACATCTATTGGTTTTT
LOC_Os03g29470
Target Sequence 
GTCAGAGGGTTTCTTTCCAGCTCAACGCCGTTGCTGCCGCCAAACGCCGAGGGACCATGGATCAGTTGAACATGGGCTAA
CTGTTGGTCGTTGGCTGGTTTCTCGCTTCCATCTTGCAAATCTGGTACATTGTCGTGTTGCATTGCCCAACAANATTCTT
GTTGGGATGGTGCTGTTACTCTTAGTTTGTTTGTTGTGAGATGAGAAGTTAATAAGCTTTAGCTTGTGCAGATAAGAACA
ATGCTTTAAGAAAGGGAAATGATTTTGCAAGAAGTGTGCATGCTGTTCTTCTTCGCTGGTTAATTCCTTACCGTCAGCAG
AGTTTAGTTGTTGAAGTTCTTTTTACAGCTTCTCAAGATTAGAGATGTGGTTTCTTCGTCTTGCACATCTATTGGTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6140.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis