Browse Element(s) Details


OsAffx.29552.2.S1_at

Description tigr:9631.m02874
TID=OsAffx.29552.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative transcription factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2948011/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29440NANA3+16733964..16736672retrotransposon protein, putative, unclassified
LOC_Os03g29460OsAffx.3363.1.S1_at11/113+16742191..1674290460S ribosomal protein L27a-3, putative, expressed
LOC_Os03g29470Os.6140.1.S1_s_at11/113+16749243..16754470Transcription initiation factor IID, 31kD subunit family protein, expressed
LOC_Os03g29480OsAffx.29552.2.S1_at11/113+16759292..16760863GRAS family transcription factor containing protein, expressed
LOC_Os03g29490OsAffx.13109.1.S1_at11/113+16765676..16767075hypothetical protein
LOC_Os03g29510NANA3+16771325..16772964retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29520NANA3+16775884..16784121retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008356biological_processasymmetric cell division
GO:0009630biological_processgravitropism
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010187biological_processnegative regulation of seed germination
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29552.2.S1_at--551--6971Chr03:16759868..16759892 (25 bp)
GTACGCCAAGTCCATCAACCTGGAC
LOC_Os03g29480
OsAffx.29552.2.S1_at--742--7191Chr03:16759780..16759804 (25 bp)
GTCGTGTGCCTCCAGTTCAGGCTCG
LOC_Os03g29480
OsAffx.29552.2.S1_at--32--8711Chr03:16759776..16759800 (25 bp)
TGTGCCTCCAGTTCAGGCTCGGGCA
LOC_Os03g29480
OsAffx.29552.2.S1_at--679--971Chr03:16759740..16759764 (25 bp)
AGGAGCGAAGAGAAGTCCTCCGCAA
LOC_Os03g29480
OsAffx.29552.2.S1_at--169--911Chr03:16759716..16759740 (25 bp)
AGGCGAGAGGCCTCAATCCGGAGCT
LOC_Os03g29480
OsAffx.29552.2.S1_at--149--6031Chr03:16759712..16759736 (25 bp)
GAGAGGCCTCAATCCGGAGCTGGTC
LOC_Os03g29480
OsAffx.29552.2.S1_at--266--8591Chr03:16759692..16759716 (25 bp)
TGGTCGTCCTCTCGGAGCTCGACTC
LOC_Os03g29480
OsAffx.29552.2.S1_at--882--9491Chr03:16759683..16759707 (25 bp)
TCTCGGAGCTCGACTCCGGCGTCGG
LOC_Os03g29480
OsAffx.29552.2.S1_at--469--8591Chr03:16759599..16759623 (25 bp)
TGTGGCGGTTCCTGGAGTCGACGTC
LOC_Os03g29480
OsAffx.29552.2.S1_at--465--9091Chr03:16759389..16759413 (25 bp)
TGCTCCGCAAGTACGACAGCGGGTG
LOC_Os03g29480
OsAffx.29552.2.S1_at--1011--7711Chr03:16759369..16759393 (25 bp)
GGGTGGGAGATGTCAGCGCCGTCGC
LOC_Os03g29480
Target Sequence 
GTACGCCAAGTCCATCAACCTGGACCTCCGCATCTCCCGCGCCGCCACCCTGGACGACGCCGTGCCCGGCGACGACGGCG
AGGCGCTCGTCGTGTGCCTCCAGTTCAGGCTCGGGCACGCCGCCGCCGAGGAGCGAAGAGAAGTCCTCCGCAAGGCGAGA
GGCCTCAATCCGGAGCTGGTCGTCCTCTCGGAGCTCGACTCCGGCGTCGGCGTCGTCGGCGGCGACGGCGGCAGCGCGGC
GGGCGAGTTCGCGGCGAGGCTGGAGCTGCTGTGGCGGTTCCTGGAGTCGACGTCGGCGGCGTTCAAGGGGAAGGACGTGG
AGGAGCGGCGGCTGCTGGAGGCCGAGGCCGGCGCGATCCTCGCGGCGGCGGACGTCGCCGCCGCTGGGGAAGGGAGGGAG
GGGTGGAGGGAGCGCATGGCGGCGGCGGGGTTCGAGGAGGCGCCGTTCGGCGCGGAGGCGGTGGAGTCCGCCAGGTCGCT
GCTCCGCAAGTACGACAGCGGGTGGGAGATGTCAGCGCCGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29552.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis