Browse Element(s) Details


OsAffx.25283.1.S1_at

Description tigr:9631.m02889
TID=OsAffx.25283.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative sentrin-specific protease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2963011/11Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29584OsAffx.25282.1.S1_at11/113+16818929..16824042hypothetical protein
LOC_Os03g29584OsAffx.3364.1.S1_at10/113+16818929..16824042hypothetical protein
LOC_Os03g29600OsAffx.10065.1.S1_at4/113+16828734..16831972transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29600Os.53970.1.S1_at1/113+16828734..16831972transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29614Os.56985.1.S1_a_at11/113+16834438..16838634Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g29614OsAffx.22005.1.S1_x_at1/113+16834438..16838634Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g29630OsAffx.25283.1.S1_at11/113+16843870..16847613Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os03g29650NANA3+16858656..16865217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29660Os.46995.1.S1_x_at1/113+16865537..16868449retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009909biological_processregulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0005634cellular_componentnucleus
GO:0008234molecular_functioncysteine-type peptidase activity
GO:0016929molecular_functionSUMO-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25283.1.S1_at--167--5931Chr03:16844894..16844918 (25 bp)
GAGAAAATCTGGTGCTTGAGAACTT
LOC_Os03g29630
OsAffx.25283.1.S1_at--148--3911Chr03:16844902..16844926 (25 bp)
CTGGTGCTTGAGAACTTGTAATTGG
LOC_Os03g29630
OsAffx.25283.1.S1_at--323--951Chr03:16845111..16845135 (25 bp)
AGGAGAGGGCGCAAAGAGAACCAAA
LOC_Os03g29630
OsAffx.25283.1.S1_at--447--4371Chr03:16845151..16845175 (25 bp)
CCACTTCTTCAATACATTCTTTTAT
LOC_Os03g29630
OsAffx.25283.1.S1_at--1033--5391Chr03:16845758..16845780 (23 bp)
GAAGCTTGCTTGTGGAAAAACTGGT
LOC_Os03g29630
OsAffx.25283.1.S1_at--149--2391Chr03:16845773..16845797 (25 bp)
AAACTGGTTATGACTATCAATCTGT
LOC_Os03g29630
OsAffx.25283.1.S1_at--279--1311Chr03:16845802..16845826 (25 bp)
AGATGGACAACCCTCAATAGATTGG
LOC_Os03g29630
OsAffx.25283.1.S1_at--509--5611Chr03:16845807..16845831 (25 bp)
GACAACCCTCAATAGATTGGGCTAT
LOC_Os03g29630
OsAffx.25283.1.S1_at--621--291Chr03:16845818..16845842 (25 bp)
ATAGATTGGGCTATGGGCTTGTTGA
LOC_Os03g29630
OsAffx.25283.1.S1_at--968--3691Chr03:16845828..16845852 (25 bp)
CTATGGGCTTGTTGAGTGTGAGAAA
LOC_Os03g29630
OsAffx.25283.1.S1_at--870--6111Chr03:16845841..16845944 (25 bp)
GAGTGTGAGAAAATCTTTATTCCAA
LOC_Os03g29630
Target Sequence 
GAGAAAATCTGGTGCTTGAGAACTTGTAATTGGTTAAATGATGAGGTCATTAATTTGTACCTTGAATTGTTAAAGGAGAG
GGCGCAAAGAGAACCAAAAAGATTTTTGAAATGCCACTTCTTCAATACATTCTTTTATAAGAAGCTTGCTTGTGGAAAAA
CTGGTTATGACTATCAATCTGTAAGAAGATGGACAACCCTCAATAGATTGGGCTATGGGCTTGTTGAGTGTGAGAAAATC
TTTATTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis