Browse Element(s) Details


Os.46564.1.S1_at

Description gb:AK063615.1
DB_XREF= gi:32973633
TID=Os.46564.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46564 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0029P06.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-D09, full insert sequence.
FL= gb:AK063615.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g050001/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04940OsAffx.20755.1.S1_at1/1110+2395859..2396574hypothetical protein
LOC_Os10g04940Os.46727.1.S1_at1/1110+2395859..2396574hypothetical protein
LOC_Os10g04950OsAffx.27750.1.S1_x_at1/1110+2397028..2397471hypothetical protein
LOC_Os10g04960Os.46856.1.S1_at1/1110+2400239..2400638hypothetical protein
LOC_Os10g04980Os.46853.2.S1_x_at11/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04980Os.46853.1.S1_at9/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04980OsAffx.27750.1.S1_x_at2/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04980Os.36607.2.S1_x_at1/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04990OsAffx.30285.1.S1_at11/1110+2414285..2416799hypothetical protein
LOC_Os10g05000Os.46564.1.S1_at1/1110+2420647..2423219F-box domain containing protein, expressed
LOC_Os10g05010Os.52741.1.S1_at11/1110+2429826..2432129expressed protein
LOC_Os10g05020Os.9427.1.S1_at11/1110+2438099..2439870Cytochrome P450 family protein, expressed
LOC_Os10g05030OsAffx.30286.1.S1_at11/1110+2442198..2442741hypothetical protein
LOC_Os10g05040Os.47463.1.S1_x_at6/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05040Os.14491.2.S1_x_at4/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05040OsAffx.16187.1.S1_at1/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46564.1.S1_at--665--9191Chr10:2423173..2423197 (25 bp)
TGCCAGAATTTAGCCTCAATGTGTG
LOC_Os10g05000
Os.46564.1.S1_at--689--1951Chr10:2423257..2423281 (25 bp)
ACTGGACAGGCTTCTTTCCGTCGAA
NONE
Os.46564.1.S1_at--1116--831Chr10:2423292..2423316 (25 bp)
ATGGAGCTGCACCAACTATTCTGGG
NONE
Os.46564.1.S1_at--686--31Chr10:2423357..2423381 (25 bp)
ATTGGTGCCTTCATGGTCAATCTGC
NONE
Os.46564.1.S1_at--125--5391Chr10:2423398..2423422 (25 bp)
GAAGCTTTCCCAAACCATGGAACCA
NONE
Os.46564.1.S1_at--1158--6531Chr10:2424135..2424159 (25 bp)
GATTATCTTTGCCAGGTATTACCAA
NONE
Os.46564.1.S1_at--1117--1131Chr10:2424179..2424203 (25 bp)
AGTCCAAGCAGCTGTTGTCTGGCCA
NONE
Os.46564.1.S1_at--983--8711Chr10:2424194..2424218 (25 bp)
TGTCTGGCCACGTGTGCCTAATATA
NONE
Os.46564.1.S1_at--319--7951Chr10:2424267..2424291 (25 bp)
GGATATCCCTTTGTCTGTAATTCTG
NONE
Os.46564.1.S1_at--381--6991Chr10:2424291..2424315 (25 bp)
GTACGGTGACACATTGAGTCCTTTT
NONE
Os.46564.1.S1_at--156--6851Chr10:2424318..2424342 (25 bp)
GTTTGCTGTGAACCTATGACTCGAT
NONE
Target Sequence 
TGCCAGAATTTAGCCTCAATGTGTGGAAGTATCAAGGCCAATTGTGATGGGTGTTGCTGGATGGATGCTGGAAAAAACAA
TTGAACTGGACAGGCTTCTTTCCGTCGAACCAGGGCGTCATGGAGCTGCACCAACTATTCTGGGCTTTGTGGAGGAACAT
AATGAAGTATTGCTGTGCACAGATATTGGTGCCTTCATGGTCAATCTGCACTCAATGCAATTCAAGAAGCTTTCCCAAAC
CATGGAACCAGGATTTTATCATCCATTCACTAGTTTTTATACTAAGAAAATGTTGCCCGAATGATGGATGATCTTAATAG
TATTTGACCATGTTGGTTGCTGGAGAGGTATTCCTTGTGATTTTGCTGAATTTTGGATGACTGATTATCTTTGCCAGGTA
TTACCAAGTCAGGTATTTTATATGTCAGTCCAAGCAGCTGTTGTCTGGCCACGTGTGCCTAATATAACATGGCTCGTTAA
ATAGCGACAATGTAAGCATGTTCAGGTGCTGTAAGGATATCCCTTTGTCTGTAATTCTGTACGGTGACACATTGAGTCCT
TTTGTGTTTGCTGTGAACCTATGACTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis