Browse Element(s) Details


OsAffx.20755.1.S1_at

Description tigr:9638.m00402
TID=OsAffx.20755.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0491011/11hypothetical protein
LOC_Os10g049401/11hypothetical protein
LOC_Os10g049301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04890Os.46727.1.S1_at10/1110+2358807..2362662expressed protein
LOC_Os10g04900Os.46856.1.S1_at11/1110+2370293..2371928F-box domain containing protein, expressed
LOC_Os10g04910OsAffx.20755.1.S1_at11/1110+2385813..2388563hypothetical protein
LOC_Os10g04919OsAffx.403.1.S1_at11/1110+2389554..2389722NA
LOC_Os10g04930OsAffx.20755.1.S1_at1/1110+2392842..2393390hypothetical protein
LOC_Os10g04940OsAffx.20755.1.S1_at1/1110+2395859..2396574hypothetical protein
LOC_Os10g04940Os.46727.1.S1_at1/1110+2395859..2396574hypothetical protein
LOC_Os10g04950OsAffx.27750.1.S1_x_at1/1110+2397028..2397471hypothetical protein
LOC_Os10g04960Os.46856.1.S1_at1/1110+2400239..2400638hypothetical protein
LOC_Os10g04980Os.46853.2.S1_x_at11/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04980Os.46853.1.S1_at9/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04980OsAffx.27750.1.S1_x_at2/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04980Os.36607.2.S1_x_at1/1110+2406236..2410713F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20755.1.S1_at--701--8011Chr10:2388253..2388277 (25 bp)
GGAGGATCAACTTTGCCACTGTCTA
LOC_Os10g04910
OsAffx.20755.1.S1_at--395--10153Chr10:2388230..2388254 (25 bp)
TATCCCTACGTGAGCTTCTATAGCA
LOC_Os10g04910
OsAffx.20755.1.S1_at--797--2071Chr10:2386360..2386384 (25 bp)
ACATTCGCAACTTACCATGCTTCTA
LOC_Os10g04910
OsAffx.20755.1.S1_at--732--2871Chr10:2386328..2386352 (25 bp)
AAGTGGAACTTATACCGCATCAGCA
LOC_Os10g04910
OsAffx.20755.1.S1_at--910--391Chr10:2386017..2386334 (25 bp)
ATCAGCACGGGAGATCTCTGGTTTC
LOC_Os10g04910
OsAffx.20755.1.S1_at--602--6411Chr10:2386005..2386029 (25 bp)
GATCTCTGGTTTCGGATTTTCTCAC
LOC_Os10g04910
OsAffx.20755.1.S1_at--425--8111Chr10:2385972..2385996 (25 bp)
GGACGTAATCCCCATGCCCGGAAGT
LOC_Os10g04910
OsAffx.20755.1.S1_at--876--2991Chr10:2385938..2385962 (25 bp)
AATGATGACAGTTACCACACCGCCA
LOC_Os10g04910
OsAffx.20755.1.S1_at--233--3091Chr10:2385899..2385923 (25 bp)
AATAGCCCAGAACATGCCGGAACCG
LOC_Os10g04910
OsAffx.20755.1.S1_at--4--4491Chr10:2385884..2385908 (25 bp)
GCCGGAACCGATGATTGTGACTGCC
LOC_Os10g04910
OsAffx.20755.1.S1_at--107--5351Chr10:2385852..2385876 (25 bp)
GAAGTTCCACATCACTATTGCGTTA
LOC_Os10g04910
Target Sequence 
GGAGGATCAACTTTGCCACTGTCTATCCCTACGTGAGCTTCTATAGCACAGATATGTTTGGGCAAAAGTCTGCCGCAAAG
AGTTTGTTAGAGATAAGAGTTGTATCCGATATGGACATATTTTGTAATCTCGGGATCAAATCAACTAGCACGCTCATACA
CCTAAAGGCAAGCTTTTGGACCTGCACTGGAGTTAAGCAGATCTCCCAGGCCTCGTGTTTTTACATCAACACATTCGCAA
CTTACCATGCTTCTACCCGGACAAGTGGAACTTATACCGCATCAGCACGGGAGATCTCTGGTTTCGGATTTTCTCACCAC
CGCCAGGACGTAATCCCCATGCCCGGAAGTTACTTCACCAATGATGACAGTTACCACACCGCCATGATCGGCAGCTGCAA
TAGCCCAGAACATGCCGGAACCGATGATTGTGACTGCCAATCAATGAAGTTCCACATCACTATTGCGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis