Browse Element(s) Details


OsAffx.403.1.S1_at

Description gb:NM_194787.1
DB_XREF= gi:37530933
TID=OsAffx.403.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAa0087H07.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0491911/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04900Os.46856.1.S1_at11/1110+2370293..2371928F-box domain containing protein, expressed
LOC_Os10g04910OsAffx.20755.1.S1_at11/1110+2385813..2388563hypothetical protein
LOC_Os10g04919OsAffx.403.1.S1_at11/1110+2389554..2389722NA
LOC_Os10g04930OsAffx.20755.1.S1_at1/1110+2392842..2393390hypothetical protein
LOC_Os10g04940OsAffx.20755.1.S1_at1/1110+2395859..2396574hypothetical protein
LOC_Os10g04940Os.46727.1.S1_at1/1110+2395859..2396574hypothetical protein
LOC_Os10g04950OsAffx.27750.1.S1_x_at1/1110+2397028..2397471hypothetical protein
LOC_Os10g04960Os.46856.1.S1_at1/1110+2400239..2400638hypothetical protein
LOC_Os10g04980Os.46853.2.S1_x_at11/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04980Os.46853.1.S1_at9/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04980OsAffx.27750.1.S1_x_at2/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04980Os.36607.2.S1_x_at1/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04990OsAffx.30285.1.S1_at11/1110+2414285..2416799hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.403.1.S1_at--171--4991Chr10:2389625..2389649 (25 bp)
GCATGAGCGGGCACCAGGATCTAGT
LOC_Os10g04919
OsAffx.403.1.S1_at--279--4671Chr10:2389631..2389655 (25 bp)
GCGGGCACCAGGATCTAGTGCAGCT
LOC_Os10g04919
OsAffx.403.1.S1_at--632--8251Chr10:2389634..2389658 (25 bp)
GGCACCAGGATCTAGTGCAGCTCGT
LOC_Os10g04919
OsAffx.403.1.S1_at--487--1731Chr10:2389637..2389661 (25 bp)
ACCAGGATCTAGTGCAGCTCGTGTA
LOC_Os10g04919
OsAffx.403.1.S1_at--926--3471Chr10:2389639..2389663 (25 bp)
CAGGATCTAGTGCAGCTCGTGTATC
LOC_Os10g04919
OsAffx.403.1.S1_at--181--7971Chr10:2389641..2389665 (25 bp)
GGATCTAGTGCAGCTCGTGTATCTT
LOC_Os10g04919
OsAffx.403.1.S1_at--92--451Chr10:2389643..2389667 (25 bp)
ATCTAGTGCAGCTCGTGTATCTTGA
LOC_Os10g04919
OsAffx.403.1.S1_at--240--1131Chr10:2389647..2389671 (25 bp)
AGTGCAGCTCGTGTATCTTGAGTTT
LOC_Os10g04919
OsAffx.403.1.S1_at--245--5071Chr10:2389650..2389674 (25 bp)
GCAGCTCGTGTATCTTGAGTTTGAA
LOC_Os10g04919
OsAffx.403.1.S1_at--784--3991Chr10:2389656..2389680 (25 bp)
CGTGTATCTTGAGTTTGAAGGCGAT
LOC_Os10g04919
OsAffx.403.1.S1_at--318--9571Chr10:2389662..2389686 (25 bp)
TCTTGAGTTTGAAGGCGATGATGCT
LOC_Os10g04919
Target Sequence 
GCATGAGCGGGCACCAGGATCTAGTGCAGCTCGTGTATCTTGAGTTTGAAGGCGATGATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis