Browse Element(s) Details


Os.46452.3.S1_at

Description gb:NM_194799.1
DB_XREF= gi:37530957
TID=Os.46452.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46452 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative proline-rich protein (OSJNBa0029P06.17), mRNA.
PROD=putative proline-rich protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0508811/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05050OsAffx.12510.1.S1_at11/1110+2455727..2456601hypothetical protein
LOC_Os10g05069Os.46726.1.S1_x_at11/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.6803.1.S1_at11/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.57362.1.S1_at2/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.384.1.S1_at1/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05088Os.46452.1.S1_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.3.S1_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.3.S1_x_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.2.S1_x_at10/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05110NANA10+2481497..2481769hypothetical protein
LOC_Os10g05120NANA10+2484961..2485675hypothetical protein
LOC_Os10g05130Os.46725.1.S1_at9/1110+2491190..2492532expressed protein
LOC_Os10g05140NANA10+2493665..2494056hypothetical protein
LOC_Os10g05150OsAffx.30289.1.S1_at11/1110+2495127..2495342hypothetical protein
LOC_Os10g05160OsAffx.20753.1.S1_at11/1110+2502113..2504631Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0019953biological_processsexual reproduction
GO:0005576cellular_componentextracellular region
GO:0008415molecular_functionacyltransferase activity
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46452.3.S1_at--137--3511Chr10:2477024..2477048 (25 bp)
CATCGACCTCCTCGGTTCGTTCGTA
LOC_Os10g05088
Os.46452.3.S1_at--644--5811Chr10:2477028..2477052 (25 bp)
GACCTCCTCGGTTCGTTCGTAACTG
LOC_Os10g05088
Os.46452.3.S1_at--983--4491Chr10:2477032..2477056 (25 bp)
TCCTCGGTTCGTTCGTAACTGTTTG
LOC_Os10g05088
Os.46452.3.S1_at--1095--9271Chr10:2477035..2477059 (25 bp)
TCGGTTCGTTCGTAACTGTTTGTCA
LOC_Os10g05088
Os.46452.3.S1_at--708--7891Chr10:2477037..2477061 (25 bp)
GGTTCGTTCGTAACTGTTTGTCATT
LOC_Os10g05088
Os.46452.3.S1_at--508--6711Chr10:2477038..2477062 (25 bp)
GTTCGTTCGTAACTGTTTGTCATTT
LOC_Os10g05088
Os.46452.3.S1_at--644--9391Chr10:2477040..2477064 (25 bp)
TCGTTCGTAACTGTTTGTCATTTAT
LOC_Os10g05088
Os.46452.3.S1_at--934--9311Chr10:2477044..2477068 (25 bp)
TCGTAACTGTTTGTCATTTATTCCT
LOC_Os10g05088
Os.46452.3.S1_at--440--7051Chr10:2477046..2477070 (25 bp)
GTAACTGTTTGTCATTTATTCCTTT
LOC_Os10g05088
Os.46452.3.S1_at--958--2551Chr10:2477048..2477072 (25 bp)
AACTGTTTGTCATTTATTCCTTTTG
LOC_Os10g05088
Os.46452.3.S1_at--169--1971Chr10:2477049..2477073 (25 bp)
ACTGTTTGTCATTTATTCCTTTTGA
LOC_Os10g05088
Target Sequence 
CATCGACCTCCTCGGTTCGTTCGTAACTGTTTGTCATTTATTCCTTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46452.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis