Browse Element(s) Details


OsAffx.20753.1.S1_at

Description tigr:9638.m00427
TID=OsAffx.20753.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative S-receptor kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0516011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05088Os.46452.1.S1_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.3.S1_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.3.S1_x_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.2.S1_x_at10/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05110NANA10+2481497..2481769hypothetical protein
LOC_Os10g05120NANA10+2484961..2485675hypothetical protein
LOC_Os10g05130Os.46725.1.S1_at9/1110+2491190..2492532expressed protein
LOC_Os10g05140NANA10+2493665..2494056hypothetical protein
LOC_Os10g05150OsAffx.30289.1.S1_at11/1110+2495127..2495342hypothetical protein
LOC_Os10g05160OsAffx.20753.1.S1_at11/1110+2502113..2504631Protein kinase domain containing protein
LOC_Os10g05170OsAffx.30290.1.S1_at11/1110+2508119..2508601serine threonine kinase, putative
LOC_Os10g05180Os.46724.1.S1_at9/1110+2509204..251567726S proteasome regulatory subunit S5A, putative
LOC_Os10g05180OsAffx.18166.1.S1_at2/1110+2509204..251567726S proteasome regulatory subunit S5A, putative
LOC_Os10g05190Os.47463.1.S1_x_at6/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.52305.2.S1_x_at5/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.14491.2.S1_x_at4/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190OsAffx.5780.1.A1_at3/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20753.1.S1_at--14--10531Chr10:2503881..2503905 (25 bp)
TTCATCACGGCAAAGGCTGACGTCT
LOC_Os10g05160
OsAffx.20753.1.S1_at--598--9111Chr10:2503921..2503945 (25 bp)
TGCTGCTGGATATCGTCTTTGGTAT
LOC_Os10g05160
OsAffx.20753.1.S1_at--1071--6891Chr10:2503942..2503966 (25 bp)
GTATCCGTGACACCATGTTCTGGGA
LOC_Os10g05160
OsAffx.20753.1.S1_at--716--3251Chr10:2504031..2504055 (25 bp)
CAACGAATTGTGGACTGCCTGGATC
LOC_Os10g05160
OsAffx.20753.1.S1_at--137--6371Chr10:2504052..2504076 (25 bp)
GATCCATGCATTATCCAGGCAGAGG
LOC_Os10g05160
OsAffx.20753.1.S1_at--171--6231Chr10:2504073..2504097 (25 bp)
GAGGCCTATGATTCTGCCAGAAGCA
LOC_Os10g05160
OsAffx.20753.1.S1_at--882--1931Chr10:2504124..2504148 (25 bp)
ACGGCCTTGTGGTGTATGCAATTCA
LOC_Os10g05160
OsAffx.20753.1.S1_at--132--8911Chr10:2504183..2504207 (25 bp)
TGAGATGCTTCAGGGCACCATCGAC
LOC_Os10g05160
OsAffx.20753.1.S1_at--795--3031Chr10:2504223..2504247 (25 bp)
AATCCCAGTTCGTCCAATTTATATG
LOC_Os10g05160
OsAffx.20753.1.S1_at--777--6491Chr10:2504247..2504271 (25 bp)
GATAGTGCGTCATACTCTAGTTGTG
LOC_Os10g05160
OsAffx.20753.1.S1_at--797--3051Chr10:2504307..2504331 (25 bp)
AATCTGCCCTATCCTAGTAGTGATG
LOC_Os10g05160
Target Sequence 
TTCATCACGGCAAAGGCTGACGTCTACAGCTTCGGTCAGCTGCTGCTGGATATCGTCTTTGGTATCCGTGACACCATGTT
CTGGGAGGAGTTGGTGGGCAGAAAGTCATTTGACTTCGTCAATATAGTCTATCAGGAAGTTTATCTAAAGCAACGAATTG
TGGACTGCCTGGATCCATGCATTATCCAGGCAGAGGCCTATGATTCTGCCAGAAGCATGGCCACAGCAGAGCACATGGTG
AAAACGGCCTTGTGGTGTATGCAATTCAGTGCAGACCATCGACCCTCCATGCAGAAGGTTGTTGAGATGCTTCAGGGCAC
CATCGACATCGATGAACCACCCAATCCCAGTTCGTCCAATTTATATGATAGTGCGTCATACTCTAGTTGTGAACCTGTGA
TGAAGATGAGTTTTAATTATAGGCACAATCTGCCCTATCCTAGTAGTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis